Table 2 Bacteria and archaea with the highest proportion of encoded signaling proteins of each type
Organism | Phylum | No. proteins (%total) |
|---|---|---|
Histidine kinases | Â | Â |
Nostoc sp. PCC 7120 | Cyano | 134 (2.2%) |
Geobacter sulfurreducens | Delta | 92 (2.7%) |
Bacteroides thetaiotaomicron | Other | 85 (1.8%) |
Rhodopseudomonas palustris | Alpha | 66 (1.4%) |
Desulfovibrio vulgaris | Delta | 64 (1.8%) |
Wolinella succinogenes | Epsilon | 39 (1.9%) |
Haloarcula marismortui | Archaea | 59 (1.4%) |
MCPs | Â | Â |
Vibrio vulnificus | Gamma | 52 (1.2%) |
Pseudomonas syringae | Gamma | 48 (0.9%) |
Vibrio cholerae | Gamma | 45 (1.2%) |
Chromobacterium violaceum | Beta | 42 (1.0%) |
Clostridium acetobutylicum | Firmicutes | 38 (1.0%) |
Wolinella succinogenes | Epsilon | 31 (1.5%) |
Halobacterium salinarium | Archaea | 17 (0.6%) |
Ser/Thr protein kinases | Â | Â |
Rhodopirellula baltica | Other | 60 (0.8%) |
Nostoc sp. PCC 7120 | Cyano | 52 (0.9%) |
Streptomyces coelicolor | Actino | 37 (0.4%) |
Streptomyces avermitilis | Actino | 35 (0.4%) |
Gloeobacter violaceus | Cyano | 20 (0.4%) |
.Thermosynechococcus elongatus | Cyano | 17 (0.7%) |
Sulfolobus tokodaii | Archaea | 12 (0.4%) |
Diguanylate cyclases | Â | Â |
Vibrio vulnificus | Gamma | 66 (1.5%) |
Shewanella oneidensis | Gamma | 52 (1.2%) |
Vibrio parahaemolyticus | Gamma | 44 (0.9%) |
Chromobacterium violaceum | Beta | 43 (1.0%) |
Vibrio cholerae | Gamma | 41 (1.1%) |
Idiomarina loihiensis | Gamma | 33 (1.3%) |
Adenylate cyclases | Â | Â |
Bradyrhizobium japonicum | Alpha | 37 (0.4%) |
Sinorhizobium meliloti | Alpha | 28 (0.5%) |
Leptospira interrogans | Spiro | 18 (0.4%) |
Mycobacterium bovis | Actino | 16 (0.4%) |
Mycobacterium tuberculosis | Actino | 16 (0.4%) |
Treponema denticola | Spiro | 9 (0.3%) |
HD-GYP domains | Â | Â |
Desulfovibrio vulgaris | Delta | 14 (0.4%) |
Vibrio vulnificus | Gamma | 13 (0.3%) |
Chromobacterium violaceum | Beta | 11 (0.2%) |
Thermotoga maritima | Other | 10 (0.5%) |
Desulfotalea psychrophila | Delta | 10 (0.3%) |
Geobacter sulfurreducens | Delta | 10 (0.3%) |