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Table 1 Haemophilus strains selected for study

From: Investigations into genome diversity of Haemophilus influenzae using whole genome sequencing of clinical isolates and laboratory transformants

Strain name

Type

Geographic location

Year

Length of sequence (Mb)

Disease/ Site of isolation

RM7190

a

Malaysia

1973

1.5

meningitis

RM6062

a

England

1965

1.5

nasopharynx

RM6064

a

England

1966

1.5

pleural fluid

RM6073

a

England

1966

1.6

bronchitis

RM7017

b

Ghana

1983

1.6

CSF

RM7060

b

New York, USA

1971

1.5

nasopharynx

RM7414

b

Kenya

1980’s

1.5

 

RM7419

b

Kenya

1980’s

1.5

 

RM7651

b

Norway

1976

1.7

 

DC11238

b

UK

2003

1.8

meningitis

DC800

b

UK

1989

1.9

meningitis

DC8708

b

UK

2000

1.8

 

DCG1574

b

Gambia

1993

1.8

nasopharynx

Eagan

b

  

1.5

 

RM7578

b

Switzerland

1983

1.8

 

RM7582

b

RSA

1980’s

1.8

 

RM7598

b

USA

1985

1.8

 

RM7018

b*

Ghana

1983

1.4

CSF

RM7122

b*

Australia

<1984

1.5

meningitis

RM7459

b*

Iceland

1984

1.4

CSF

RM7465

b*

Iceland

1985

1.6

CSF

RM7617

b*

Malaysia

1970’s

1.5

CSF

RM6132

c

England

1964

1.6

chronic sinusitis

RM6134

c

England

1975

1.4

abscess

RM7422

c

Kenya

1986

1.4

 

RM6158

e

England

1962

1.7

cystic fibrosis

RM6237

f

England

1963

1.4

nasal discharge

RM7283

f

Malaysia

1972

1.5

trachea

RM7290

f

Malaysia

1974

1.5

trachea(malnutrition)

PLMIOG2822H-L

H. haemolyticus

  

1.6

 

PLh.hlnctc10659T

H. haemolyticus

  

1.6

 

PLHparaphorH-L

H. paraphrophilus

  

1.7

 

PLMIOG2838H-L

H. haemolyticus

  

1.4

 

DCMO-099-5-LST-8

H. parainfluenzae

UK

1997

1.7

nasopharynx (commensal)

DCMO-099-8-MST-8

H. parainfluenzae

UK

1997

1.6

nasopharynx (commensal)

DCO-CFE24-1-T2ST-27

H. parainfluenzae

UK

2001

1.8

nasopharynx (commensal)

DCO-OM30-1-A1

H. parainfluenzae

UK

2001

1.6

nasopharynx (commensal)

DCT2T1ST-34

H. parainfluenzae

Gambia

2001

1.9

nasopharynx (commensal)

DCT5A1ST-41

H. parainfluenzae

Gambia

2001

1.9

nasopharynx (commensal)

DCT7B2ST-47

H. parainfluenzae

Gambia

2001

1.8

nasopharynx (commensal)

DCT8A1ST-52

H. parainfluenzae

Gambia

2001

1.9

nasopharynx (commensal)

RY15

H. parainfluenzae

  

1.7

nasopharynx (commensal)

RY20

H. parainfluenzae

  

1.7

nasopharynx (commensal)

RY22

H. parainfluenzae

  

1.9

nasopharynx (commensal)

RY8

H. parainfluenzae

  

1.7

nasopharynx (commensal)

DCT2B3ST-33

hybrid

Gambia

2001

1.4

nasopharynx (commensal)

DCG-T53T1

hybrid

Gambia

2001

1.5

nasopharynx (commensal)

DCT8B3ST-51

hybrid

Gambia

2001

1.5

nasopharynx (commensal)

DH1500spain

NTHi

Spain

2000

1.4

COPD

DH1559spain

NTHi

Spain

2000

1.5

COPD

DH1630spain

NTHi

Spain

2000

1.3

COPD

DH398spain

NTHi

Spain

2000

1.5

COPD

Fi176

NTHi

Finland

1995

1.5

otitis media

Fi723

NTHi

Finland

1995

1.6

otitis media

Fi981

NTHi

Finland

1995

1.7

otitis media

RM6011

NTHi

UK

1984

1.3

meningitis

RM6019

NTHi

UK

1984

1.3

meningitis

RM6033

NTHi

UK

1984

1.5

pus hydrosalpinx

RM6051

NTHi

UK

1985

1.5

CSF

RM7028

NTHi

PNG

1980’s

1.5

blood

RM7308

NTHi

South Korea

1984

1.5

nasopharynx

RM7309

NTHi

South Korea

1984

1.5

nasopharynx

RM7347

NTHi

USA

1985

1.4

sputum

RM7448

NTHi

Iceland

1978

1.4

blood

RM7477

NTHi

Iceland

1986

1.6

 

RM7490

NTHi

RSA

1980’s

1.6

CSF

DH1513spain

NTHi

Spain

2000

1.5

COPD

Fi1180

NTHi

Finland

1995

1.6

otitis media

Fi162

NTHi

Finland

1995

1.7

otitis media

Fi667

NTHi

Finland

1995

1.7

otitis media

RM7029

NTHi

PNG

1980’s

1.6

blood

RM7637

NTHi

China

1971

1.4

sputum

DC7331

NTHi

UK

1997

1.8

meningitis

DC7654

NTHi

UK

1997

1.8

blood

DC7695

NTHi

UK

1997

1.9

CSF

DCg2120

NTHi

Gambia

 

1.8

nasopharynx

DCH3151

NTHi

Gambia

1993

1.8

pneumonia

DCO-OM33-2B3ST-21

NTHi

UK

2001

1.5

nasopharynx

PLMIOG2819

   

1.5

 

PLMIOG2820

   

1.5

 

RM6006

   

1.4

 

PLMIOG2836

   

1.7

 

DCMO-009-14-S-TR-ST-12

 

UK

1998

1.6

nasopharynx

PL10839T

   

1.6

 

PLMIOG2837

   

1.6

 

RM7054

NTHi

USA

1984

 

blood (sepsis)

Fi1247

NTHi

Finland

1995

 

otitis media

Fi1124

NTHi

Finland

1995

 

otitis media

Fi486

NTHi

Finland

1995

 

otitis media

Fi432

NTHi

Finland

1995

 

otitis media

RM7068

NTHi

PNG

  

pneumonia

Fi285

NTHi

Finland

1995

 

otitis media

PP H.parasuis

NTHi

    

RM7876

     

Fi1200

NTHi

Finland

1995

 

otitis media

RM7066

     
  1. The 96 strains selected for genome sequencing are listed along with respective information on serotype, isolation, and associated disease. The total length of the genome sequence following assembly is listed (to the nearest 0.1 Mbp) for each strain. The 11 strains below the horizontal line are those for which the quality of the assembled genome sequence was insufficient for the sequence data to be included in subsequent analyses.
  2. * Strains were originally designated as NT.