From: Metagenome analyses of corroded concrete wastewater pipe biofilms reveal a complex microbial system
Subsystem | Gene | n | % of genomes with gene†| q-value* | Odds ratio | ||
---|---|---|---|---|---|---|---|
TP | BP | TP/BP | BP/TP | ||||
Single-copy genes ‡ |  | 5 | 100 | 100 | ns | 1.0 | 1.0 |
Sulfur metabolism | Â | Â | Â | Â | Â | Â | Â |
Sulfate adenylyltransferase (ATP) | cysN | 1 | 54 | 33 | 0.000 | 1.6 | 0.6 |
Adenylyl-sulfate kinase | aspK | 1 | 52 | 15 | 0.000 | 3.2 | 0.3 |
Phosphoadenylyl-sulfate reductase | cysH | 1 | 26 | 22 | ns | 1.1 | 0.9 |
Adenylyl-sulfate reductase | aprA | 1 | 15 | 10 | ns | 1.4 | 0.7 |
3'(2'),5'-bisphosphate nucleotidase | cysQ | 1 | 67 | 40 | 0.000 | 1.6 | 0.6 |
Hydrogensulfite reductase | dsrA | 1 | 13 | 15 | ns | 0.8 | 1.3 |
Sulfite reductase (NADPH) | cysJ | 1 | 28 | 4 | 0.000 | 7.6 | 0.1 |
Sulfite reductase (DSR) | dsrB | 1 | 13 | 14 | ns | 1.0 | 1.0 |
Sulfite reductase (ferredoxin) | sir | 1 | 22 | 6 | 0.000 | 3.7 | 0.3 |
Cysteine synthase | cysK | 1 | >100 | >100 | ns | 1.0 | 1.0 |
Thiosulfate oxidise | soxB | 1 | 66 | 7 | 0.000 | 9.1 | 0.1 |
Nitrogen metabolism | Â | Â | Â | Â | Â | Â | Â |
Ammonia monooxygenase | amoA | 1 | 8 | 29 | 0.000 | 0.3 | 3.6 |
Nitrate reductase | napA | 1 | 2 | 13 | 0.000 | 0.1 | 8.0 |
Nitrate reductase | narG | 1 | 17 | 28 | 0.000 | 0.6 | 1.7 |
Nitrate reductase | nasA | 1 | 68 | 34 | 0.000 | 2.0 | 0.5 |
Nitric oxide reductase | norB | 1 | 2 | 23 | 0.001 | 0.1 | 9.4 |
Nitric oxide reductase | qnor | 1 | 22 | 23 | ns | 1.0 | 1.0 |
Nitrite reductase | nirK | 1 | 17 | 3 | 0.000 | 5.2 | 0.2 |
Nitrite reductase | nirS | 1 | 2 | 30 | 0.000 | 0.1 | 16.4 |
Nitrous oxide reductase | nosZ | 1 | 10 | 35 | 0.030 | 0.3 | 3.6 |
Nitrite reductase | nirB | 1 | 64 | 44 | 0.000 | 1.4 | 0.7 |
Nitrite reductase | nirA | 1 | 7 | 1 | 0.018 | 5.6 | 0.2 |
Nitrite reductase | nrfA | 1 | 1 | 45 | 0.000 | 0.0 | 58.4 |
Nitrogenase (molybdenum-iron) | nifD | 1 | 1 | 23 | 0.000 | 0.0 | 24.6 |
Nitrogenase (iron) | nifH | 1 | 15 | 23 | 0.006 | 0.6 | 1.6 |