Probe | Target Bacterial group | Sequence (5'-3') | Hybridisation Conditions (°C) | References |
---|---|---|---|---|
Eub 338 | Domain bacteria | GCT GCC TCC CGT AGG AGT | 50 | [13] |
Non 338 | Negative control | ACA TCC TAC GGG AGG C | 50 | [14] |
Bif 164 | Bifidobacterium | CAT CCG GCA TTA CCA CCC | 50 | [24] |
Lab 158 | Lactobacillus/Enterococcus | GGT ATT AGC A(C/T)C TGT TTC CA | 45 | [25] |
Bac 303 | Bacteroides/Prevotella | CCA ATG TGG GGG ACC TT | 45 | [26] |
Ecol 1513 | Escherichia coli | CAC CGT AGT GCC TCG TCA TCA | 50 | [27] |
Chis 150 | Clostridium histolyticum | TTA TGC GGT ATT AAT CT(C/T) CCT TT | 50 | [28] |
C Lis 135 | Clostridium lituseburense | GTT ATC CGT GTG TAC AGG G | 50 | [28] |
FPrau 645 | Faecalibacterium prausnitzii | CCT CTG CAC TAC TCA AGA AAA AC | 50 | [29] |
SRB 687 | Sulphate-reducing bacteria | TAC GGA TTT CAC TCC T | 50 | [30] |
STA | Staphylococcus | TCC TCC ATA TCT CTG CGC | 50 | [31] |