Table 1 General features of T. rubrum EST libraries
Library | GenBank accession No. | No. of raw ESTs | No. of contigs | No. of singletons | Unique genes | No. of unigenes matching GenBank database (NR)(a) | No. of unigenes without match to GenBank dbEST database(b) | |
|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | Â | Â | Â | matching GenBank database (NR)(c) | without match to GenBank database (NR) |
Total | FE524602-FE527336 | 2735 | 296 | 1092 | 1388 | 681 (49.1%) | 262 (18.9%) | 404 (29.1%) |
1 | FE524602-FE525578 | 977 | 75 | 545 | 620 | 235 (37.9%) | 73 (11.8%) | 207 (33.4%) |
2 | FE525579-FE525681 | 103 | 23 | 14 | 37 | 24 (64.9%) | 18 (48.6%) | 10 (27.0%) |
3 | FE525682-FE525782 | 101 | 7 | 76 | 83 | 46 (55.4%) | 19 (22.9%) | 20 (24.1%) |
4 | FE525783-FE526029 | 247 | 64 | 56 | 120 | 62 (51.7%) | 31 (25.8%) | 36 (30.0%) |
5 | FE526030-FE526148 | 119 | 7 | 50 | 57 | 26 (45.6%) | 7 (12.3%) | 17 (29.8%) |
6 | FE526149-FE526246 | 98 | 12 | 5 | 17 | 11 (64.7%) | 5 (29.4%) | 3 (17.6%) |
7 | FE526247-FE526554 | 308 | 36 | 59 | 95 | 69 (72.6%) | 25 (26.3%) | 17 (17.9%) |
8 | FE526555-FE526754 | 200 | 30 | 18 | 48 | 27 (56.3%) | 21 (43.8%) | 15 (31.3%) |
9 | FE526755-FE527126 and FG235008-FG235038 | 372 | 43 | 248 | 291 | 162 (55.7%) | 53 (18.2%) | 74 (25.4%) |
10 | FE527127-FE527336 | 210 | 26 | 143 | 169 | 106 (62.7%) | 34 (20.1%) | 23 (13.6%) |