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Table 1 Oligonucleotide primers and probes for detection of S. pneumoniae, H. influenzae and N. meningitidis.

From: Multiplex quantitative PCR for detection of lower respiratory tract infection and meningitis caused by Streptococcus pneumoniae, Haemophilus influenzae and Neisseria meningitidis

 

Sequence (5' to 3')a

Positions in target gene

S. pneumoniae

  

Spn9802 F

5'-A GTC GTT CCA AGG TAA CAA GTC T-3'

3370-3392

Spn9802 R

5'-AC CAA CTC GAC CAC CTC TTT-3'

3525-3506

Spn9802 FAM

5'-FAM-aTc AGa TTg CTg ATa AAa CgA-BHQ1-'3

 

H. influenzae

  

Hi P6 F

5'-CCA GCT GCT AAA GTA TTA GTA GAA G-3'

302-326

Hi P6 R

5'-TTC ACC GTA AGA TAC TGT GCC-3'

477-457

Hi P6 JOE

5'-JOE- CAg ATg CAg TTg AAg GTt Att tAG-BHQ1-'3

 

N. meningitidis

  

ctrA F

5'-GCTGCGGTAGGTGGTTCAA-3'

617-635

ctrA R

5'-TTGTCGCGGATTTGCAACTA-3'

727-708

ctrA ROX

5'-ROX-CATTGCCACGTGTCAGCTGCACAT- BHQ1-'3

 
  1. a Positions with lower case letters indicate locked nucleic acid [27].