From: Physiology of Pseudomonas aeruginosa in biofilms as revealed by transcriptome analysis
 |  | DFB* | Comp.* |  |  |
---|---|---|---|---|---|
Gene ID | Name | Rank | Rank | Note | Description |
PA0038 | Â | 185 | 1734 | Â | hypothetical protein |
PA0105-0107 | coxBA | 174 | 3225 | O2 | cytochrome c oxidase |
PA0200 | Â | 145 | 3494 | Â | hypothetical protein |
PA0284 | Â | 77 | 712 | Â | hypothetical protein |
PA0409 | pilH | 56 | 539 | Â | Type IV pili biogenesis |
PA0515-0519 | nirFCMS | 207 | 2547 | O2 | nitrite reduction |
PA0523-0524 | norCB | 177 | 3770 | O2 | nitric oxide reductase |
PA0586-0588 | Â | 123 | 1848 | O2 | conserved hypothetical and serine protein kinase |
PA0713 | Â | 103 | 3107 | O2 | conserved hypothetical protein |
PA717-0726 | Â | 185 | 3323 | Â | hypothetical proteins of bacteriophage Pf1 |
PA0763 | mucA | 30 | 296 | Â | anti-sigma factor |
PA1041 | Â | 47 | 1850 | Â | probable outer membrane protein precursor |
PA1174 | napA | 270 | 2433 | O2 | periplasmic nitrate reductase |
PA1178 | oprH | 5 | 831 | Â | outer membrane protein H1 precursor |
PA1190 | Â | 105 | 3558 | Â | conserved hypothetical protein |
PA1414 | Â | 14 | 756 | Â | hypothetical protein |
PA1431 | rsaL | 45 | 1835 | O2 | regulatory protein |
PA1555-1556 | Â | 64 | 1312 | O2 | cytochrome c oxidase |
PA1592 | Â | 4 | 67 | Â | hypothetical protein |
PA1673 | Â | 152 | 2346 | O2 | hypothetical protein |
PA1746 | Â | 173 | 2016 | O2 | hypothetical protein |
PA1982-1983 | exaAB | 315 | 5317 | Â | alcohol dehydrogenase, cytochrome c550 |
PA2274 | Â | 378 | 3473 | Â | putative monooxygenase |
PA2381 | Â | 64 | 1279 | O2 | conserved hypothetical protein |
PA2485 | Â | 161 | 2704 | Â | hypothetical protein |
PA2501 | Â | 133 | 1858 | Â | hypothetical protein |
PA2622 | cspD | 19 | 591 | Â | stationary phase replication inhibitor |
PA2754 | Â | 140 | 1797 | Â | conserved hypothetical protein |
PA2780-2781 | Â | 205 | 2983 | Â | hypothetical proteins |
PA2807-2808 | ptrA | 47 | 3378 | Cu | hypothetical and two-component repressor |
PA2862 | lipA | 176 | 2785 | Â | lactonizing lipase precursor |
PA2883 | Â | 121 | 2207 | Â | hypothetical protein |
PA2937 | Â | 53 | 3144 | Â | hypothetical protein |
PA3040 | Â | 40 | 553 | Â | conserved hypothetical protein |
PA3049 | rmf | 11 | 1575 | O2 | ribosome modulation factor |
PA3126 | ibpA | 134 | 1382 | Â | heat-shock protein IbpA |
PA3181 | Â | 226 | 2020 | Â | 2-keto-3-deoxy-6-phosphogluconate aldolase |
PA3186-3190 | oprB | 68 | 1936 | Â | glucose uptake |
PA3205 | Â | 16 | 1033 | Â | hypothetical protein |
PA3235 | Â | 101 | 2118 | Â | conserved hypothetical protein |
PA3309 | Â | 33 | 1076 | O2 | universal stress protein |
PA3369-3371 | Â | 196 | 3302 | Â | hypothetical proteins |
PA3412 | Â | 163 | 3772 | Cu | probable transcriptional regulator |
PA3415 | Â | 225 | 2682 | Â | probable dihydrolipoamide acetyltransferase |
PA3416-3417 | Â | 259 | 2723 | Â | pyruvate dehydrogenase |
PA3418 | ldh | 52 | 2352 | Â | leucine dehydrogenase |
PA3515-3519 | Â | 92 | 2804 | Cu | hypothetical proteins and probable lyases |
PA3523 | Â | 128 | 3765 | Cu | probable RND efflux membrane fusion protein |
PA3552 | pmrH | 269 | 2400 | Â | lipopolysaccharide modification |
PA3572 | Â | 107 | 1616 | Â | hypothetical protein |
PA3577 | Â | 253 | 3216 | Â | hypothetical protein |
PA3690-3691 | Â | 57 | 1482 | Cu | probable metal-transporting P-type ATPase |
PA3792 | leuA | 38 | 603 | Â | 2-isopropylmalate synthase |
PA3819 | Â | 44 | 508 | Â | conserved hypothetical protein |
PA3920 | Â | 79 | 2577 | Cu | probable metal transporting P-type ATPase |
PA3973 | Â | 292 | 2829 | Â | probable transcriptional regulator |
PA4352 | Â | 114 | 1316 | O2 | conserved hypothetical protein |
PA4550-4551 | fimUpilV | 167 | 2088 | Â | type 4 fimbrial biogenesis proteins |
PA4577 | Â | 124 | 2292 | Â | hypothetical protein |
PA4607-4611 | Â | 136 | 2173 | Â | hypothetical proteins |
PA4739 | Â | 143 | 1345 | O2 | conserved hypothetical protein |
PA4773,4776 | pmrB | 166 | 2538 | Â | hypothetical and two-component sensor |
PA4781-82 | Â | 202 | 2538 | Â | probable two-component response regulator |
PA5100 | hutU | 258 | 2660 | O2 | urocanase |
PA5212 | Â | 29 | 881 | Â | hypothetical protein |
PA5427 | adhA | 112 | 2664 | O2 | alcohol dehydrogenase |
PA5446 | Â | 7 | 866 | Â | hypothetical protein |
PA5460 | Â | 118 | 3962 | Â | hypothetical protein |
PA5475 | Â | 294 | 2787 | O2 | hypothetical protein |