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Microbial genetics, genomics and proteomics

Section edited by Hirotada Mori

This section aims to publish studies relating to all aspects of microbial genomics, proteomics, metabolomics and systems biology.

Page 1 of 15
  1. Content type: Research article

    The aim of this study was to identify mutations of rpoB, katG, inhA and ahp-genes associated Mycobacterium tuberculosis resistance to rifampicin (RIF) and isoniazid (INH) in Kyrgyz Republic. We studied 633 smear ...

    Authors: Jainagul Isakova, Nurmira Sovkhozova, Denis Vinnikov, Zoy Goncharova, Elnura Talaibekova, Nazira Aldasheva and Almaz Aldashev

    Citation: BMC Microbiology 2018 18:22

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  2. Content type: Research article

    A remarkable exception to the large genetic diversity often observed for bacteriophages infecting a specific bacterial host was found for the Cutibacterium acnes (formerly Propionibacterium acnes) phages, which a...

    Authors: Lucy Cheng, Laura J. Marinelli, Noël Grosset, Sorel T. Fitz-Gibbon, Charles A. Bowman, Brian Q. Dang, Daniel A. Russell, Deborah Jacobs-Sera, Baochen Shi, Matteo Pellegrini, Jeff F. Miller, Michel Gautier, Graham F. Hatfull and Robert L. Modlin

    Citation: BMC Microbiology 2018 18:19

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  3. Content type: Research article

    Rhodotorula toruloides is an outstanding producer of lipids and carotenoids. Currently, information on the key metabolic pathways and their molecular basis of regulation remains scarce, severely limiting efforts ...

    Authors: Yanbin Liu, Chong Mei John Koh, Sihui Amy Yap, Minge Du, Mya Myintzu Hlaing and Lianghui Ji

    Citation: BMC Microbiology 2018 18:14

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  4. Content type: Research article

    Recurrent acute otitis media (rAOM, recurrent ear infection) is a common childhood disease caused by bacteria termed otopathogens, for which current treatments have limited effectiveness. Generic probiotic therap...

    Authors: Rachael Lappan, Kara Imbrogno, Chisha Sikazwe, Denise Anderson, Danny Mok, Harvey Coates, Shyan Vijayasekaran, Paul Bumbak, Christopher C. Blyth, Sarra E. Jamieson and Christopher S. Peacock

    Citation: BMC Microbiology 2018 18:13

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  5. Content type: Research article

    The gene expression profile and metabolic pathways of Aspergillus oryzae underlying the anatomical and morphological differentiation across different growth stages have not been fully characterized. The rapid dev...

    Authors: Bin He, Zhihong Hu, Long Ma, Haoran Li, Mingqiang Ai, Jizhong Han and Bin Zeng

    Citation: BMC Microbiology 2018 18:12

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  6. Content type: Methodology Article

    Microbial arrays, with a large number of different strains on a single plate printed with robotic precision, underpin an increasing number of genetic and genomic approaches. These include Synthetic Genetic Arr...

    Authors: David B. H. Barton, Danae Georghiou, Neelam Dave, Majed Alghamdi, Thomas A. Walsh, Edward J. Louis and Steven S. Foster

    Citation: BMC Microbiology 2018 18:9

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  7. Content type: Research article

    Phosphate is an essential compound for life. Escherichia coli employs a signal transduction pathway that controls the expression of genes that are required for the high-affinity acquisition of phosphate and the u...

    Authors: Ramesh K. Vuppada, Colby R. Hansen, Kirsta A. P. Strickland, Keilen M. Kelly and William R. McCleary

    Citation: BMC Microbiology 2018 18:8

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  8. Content type: Research article

    Plague is a flea-borne zoonotic and invasive disease caused by a gram negative coccobacillus bacterium called Yersinia pestis. Plague has caused three devastating pandemics globally namely: the Justinian, Black D...

    Authors: Stanley S. Nyirenda, Bernard M. Hang′ombe, Edgar Simulundu, Evans Mulenga, Ladslav Moonga, Robert S. Machang′u, Gerald Misinzo and Bukheti S. Kilonzo

    Citation: BMC Microbiology 2018 18:2

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  9. Content type: Research article

    Mycobacteriophages are viruses that infect Mycobacterium hosts. A large collection of phages known to infect the same bacterial host strain – Mycobacterium smegmatis mc2155 – exhibit substantial diversity and cha...

    Authors: Rebekah M. Dedrick, Travis N. Mavrich, Wei L. Ng and Graham F. Hatfull

    Citation: BMC Microbiology 2017 17:225

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  10. Content type: Research article

    Crotalaria aegyptiaca, a low shrub is commonly observed in the sandy soils of wadis desert and is found throughout all regions in Oman. A survey for phytoplasma diseases was conducted....

    Authors: Ali Al-Subhi, Saskia A. Hogenhout, Rashid A. Al-Yahyai and Abdullah M. Al-Sadi

    Citation: BMC Microbiology 2017 17:221

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  11. Content type: Research article

    The bacterial spirochete Borrelia burgdorferi is the causative agent of the most commonly reported arthropod-borne illness in the United States, Lyme disease. A family of proteins containing von Willebrand Factor...

    Authors: Christina M. Brock, Manuel Bañó-Polo, Maria J. Garcia-Murria, Ismael Mingarro and Maria Esteve-Gasent

    Citation: BMC Microbiology 2017 17:219

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  12. Content type: Research article

    The genomic diversity of different species within the genus Lactococcus and the relationships between genomic differentiation and environmental factors remain unclear. In this study, type isolates of ten Lactococ...

    Authors: Jie Yu, Yuqin Song, Yan Ren, Yanting Qing, Wenjun Liu and Zhihong Sun

    Citation: BMC Microbiology 2017 17:213

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  13. Content type: Research article

    Bacterial nucleoid consists of genome DNA, RNA, and hundreds of nucleoid-associated proteins (NAPs). Escherichia coli nucleoid is compacted towards the stationary phase, replacing most log-phase NAPs with the maj...

    Authors: Yuri Ushijima, Ryosuke L. Ohniwa and Kazuya Morikawa

    Citation: BMC Microbiology 2017 17:207

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  14. Content type: Research article

    Caseous lymphadenitis (CLA) is a disease that affects sheep, goats and occasionally humans. The etiologic agent is the Corynebacterium pseudotuberculosis bacillus. The objective of this study was to build a gene ...

    Authors: Cleber Eduardo Galvão, Stenio Perdigão Fragoso, Carina Elisei de Oliveira, Odinéia Forner, Renata Ribeiro Bastos Pereira, Cleber Oliveira Soares and Grácia Maria Soares Rosinha

    Citation: BMC Microbiology 2017 17:202

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  15. Content type: Research article

    The aminoglycoside antibiotic gentamicin was supposed to induce a crosstalk between the Cpx- and the Arc-two-component systems (TCS). Here, we investigated the physical interaction of the respective TCS compon...

    Authors: Emina Ćudić, Kristin Surmann, Gianna Panasia, Elke Hammer and Sabine Hunke

    Citation: BMC Microbiology 2017 17:197

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  16. Content type: Research article

    Advancements in Next Generation Sequencing (NGS) technologies regarding throughput, read length and accuracy had a major impact on microbiome research by significantly improving 16S rRNA amplicon sequencing. A...

    Authors: Imane Allali, Jason W. Arnold, Jeffrey Roach, Maria Belen Cadenas, Natasha Butz, Hosni M. Hassan, Matthew Koci, Anne Ballou, Mary Mendoza, Rizwana Ali and M. Andrea Azcarate-Peril

    Citation: BMC Microbiology 2017 17:194

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