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Clinical microbiology and vaccines

Section edited by Igor Mokrousov 

This section aims to publish studies looking at all aspects of clinical microbiology, including virology, epidemiology, antimicrobial resistance, vaccines and immune responses.

Page 1 of 7

  1. Diarrhoeagenic Escherichia coli (DEC) infections are common in children in low-middle income countries (LMICs). However, detecting the various DEC pathotypes is complex as they cannot be differentiated by classic...

    Authors: Vu Thuy Duong, Le Thi Phuong Tu, Ha Thanh Tuyen, Le Thi Quynh Nhi, James I. Campbell, Pham Van Minh, Hoang Le Phuc, Tran Thi Hong Chau, Nguyen Minh Ngoc, Lu Lan Vi, Claire Jenkins, Iruka Okeke, Ellen Higginson and Stephen Baker

    Citation: BMC Microbiology 2020 20:192

    Content type: Research article

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  2. Our previous research indicated the excellent in vitro antibacterial activity of Eravacycline (Erava) and its heteroresistance frequency against clinical Staphylococcus aureus isolates. In this study, we further ...

    Authors: Zhanwen Wang, Zhiwei Lin, Bing Bai, Guangjian Xu, Peiyu Li, Zhijian Yu, Qiwen Deng, Yongpeng Shang and Jinxin Zheng

    Citation: BMC Microbiology 2020 20:189

    Content type: Research article

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  3. Ceftazidime-avibactam was approved in China in 2019 for treating complicated intra-abdominal infections, hospital-acquired pneumonia, ventilator-associated pneumonia, and infections caused by Enterobacterales and...

    Authors: Qi Wang, Feifei Zhang, Zhanwei Wang, Hongbin Chen, Xiaojuan Wang, Yawei Zhang, Shuguang Li and Hui Wang

    Citation: BMC Microbiology 2020 20:187

    Content type: Research article

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  4. Tigecycline is a last-resort antibiotic used to treat severe infections caused by extensively drug-resistant bacteria. Recently, novel tigecycline resistance genes tet(X3) and tet(X4) have been reported, which po...

    Authors: Yiming Li, Zhangqi Shen, Shuangyang Ding and Shaolin Wang

    Citation: BMC Microbiology 2020 20:174

    Content type: Methodology article

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  5. Streptococcus pneumoniae causes serious infections worldwide. The aim of this study was to determine the molecular characteristic, antibiotic resistance pattern and capsular types of invasive S. pneumoniae in Teh...

    Authors: Maryam Beheshti, Fereshteh Jabalameli, Mohammad Mehdi Feizabadi, Farhad Bonakdar Hahsemi, Reza Beigverdi and Mohammad Emaneini

    Citation: BMC Microbiology 2020 20:167

    Content type: Research article

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  6. Health-care professionals need to collect wound samples to identify potential pathogens that contribute to wound infection. Obtaining appropriate samples from diabetic foot ulcers (DFUs) where there is a suspi...

    Authors: J. Travis, M. Malone, H. Hu, A. Baten, K. Johani, F. Huygens, K. Vickery and K. Benkendorff

    Citation: BMC Microbiology 2020 20:163

    Content type: Research article

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  7. To investigate the species distribution of non-tuberculous mycobacteria (NTM) among tuberculosis (TB) specimens collected from January 2013 to December 2018 at Peking Union Medical Hospital (Beijing), China. N...

    Authors: Jing-jing Huang, Ying-xing Li, Ying Zhao, Wen-hang Yang, Meng Xiao, Timothy Kudinha and Ying-chun Xu

    Citation: BMC Microbiology 2020 20:158

    Content type: Research article

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  8. Enterobacterial common antigen (ECA) is a family-specific surface antigen shared by all members of the Enterobacteriaceae family. Previous studies showed that the loss of ECA results in Salmonella attenuation, in...

    Authors: Qing Liu, Xuegang Shen, Xiaoping Bian and Qingke Kong

    Citation: BMC Microbiology 2020 20:150

    Content type: Research article

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  9. Bacterial meningitis is a serious inflammation of the meninges. Antimicrobial therapy on early cerebrospinal fluid (CSF) examination has an important role in diagnosis. The disease is still challenging in deve...

    Authors: Demissie Assegu Fenta, Kinfe Lemma, Henok Tadele, Birkneh Tilahun Tadesse and Birrie Derese

    Citation: BMC Microbiology 2020 20:125

    Content type: Research article

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    The Correction to this article has been published in BMC Microbiology 2020 20:153

  10. The antibiotics generally used in farm animals are rapidly losing their effectiveness all over the world as bacteria develop antibiotic resistance. Like some other pathogenic bacteria multidrug-resistant strai...

    Authors: Md. Akil Hossain, Hae-Chul Park, Kwang-Jick Lee, Sung-Won Park, Seung-Chun Park and JeongWoo Kang

    Citation: BMC Microbiology 2020 20:118

    Content type: Research article

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  11. Xanthomonas oryzae pv. oryzae (Xoo) can cause destructive bacterial blight in rice. As an antibacterial, resveratrol may inhibit Xoo growth. This study focused on the potential structural-activity relationship of...

    Authors: Huai-Zhi Luo, Ying Guan, Rui Yang, Guo-Liang Qian, Xian-Hui Yang, Jun-Song Wang and Ai-Qun Jia

    Citation: BMC Microbiology 2020 20:117

    Content type: Research article

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  12. Concern about Haemophilus influenzae infection has been increasing over recent decades. Given the emergence of H. influenzae with severe drug resistance, we assessed the prevalence of as well as risk factors and ...

    Authors: Pei-Yi Su, Ay-Huey Huang, Chung-Hsu Lai, Hsiu-Fang Lin, Tsun-Mei Lin and Cheng-Hsun Ho

    Citation: BMC Microbiology 2020 20:102

    Content type: Research article

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  13. Multi-drug resistant (MDR) Acinetobacter baumannii is one of the most important causes of nosocomial infections. The purpose of this study was to identify antibiotic resistance patterns, biofilm formation and the...

    Authors: Ali Mohammadi Bardbari, Parviz Mohajeri, Mohammad Reza Arabestani, Manoochehr Karami, Fariba Keramat, Saba Asadollahi, Amir Khodavirdipour and Mohammad Yousef Alikhani

    Citation: BMC Microbiology 2020 20:101

    Content type: Research article

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  14. Visceral leishmaniasis in Ethiopia is a re-emerging threat to public health, with increased geographical distribution and number of cases. It is a fatal disease without early diagnosis and treatment; thus, the...

    Authors: Birhanu Ayelign, Mohammedamin Jemal, Markos Negash, Meaza Genetu, Tadelo Wondmagegn, Ayalew Jejaw Zeleke, Ligabaw Worku, Abebe Genetu Bayih, Girma Shumie, Sinknesh Wolde Behaksra, Tiruwork Fenta, Demekech Damte, Arega Yeshanew and Endalamaw Gadisa

    Citation: BMC Microbiology 2020 20:90

    Content type: Research article

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  15. The aim was to evaluate the changes of 16S rDNA sequencing and LC-MS metabolomics in breast cancer and explore the growth inhibition of breast cancer cells by Faecalibacterium prausnitzii.

    Authors: Ji Ma, Lingqi Sun, Ying Liu, Hui Ren, Yali Shen, Feng Bi, Tao Zhang and Xin Wang

    Citation: BMC Microbiology 2020 20:82

    Content type: Research article

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  16. Despite vaccination programs, Streptococcus pneumoniae remains among the main microorganisms involved in bacterial pneumonia, notably in terms of severity. The prognosis of pneumococcal infections is conditioned ...

    Authors: Cyrille H. Haddar, Johan Joly, Anne Carricajo, Paul O. Verhoeven, Florence Grattard, Olivier Mory, Evelyne Begaud, Yves Germani, Aymeric Cantais and Bruno Pozzetto

    Citation: BMC Microbiology 2020 20:79

    Content type: Research article

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  17. Different diagnostic methods have been used for the laboratory confirmation of leptospirosis. Molecular diagnostic techniques are not only faster and more sensitive than culture analysis, but can also detect a Le...

    Authors: Daša Podgoršek, Eva Ružić-Sabljić, Mateja Logar, Andrea Pavlović, Tatjana Remec, Zvonko Baklan, Emil Pal and Tjaša Cerar

    Citation: BMC Microbiology 2020 20:59

    Content type: Research article

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  18. The treatment of Enterobacteriaceae family including diarrheagenic E. coli (DEC) has been increasingly complicated due to the emergence of resistant strains. Here we report on the phenotypic resistance profiles a...

    Authors: Nahla O. Eltai, Asmaa A. Al Thani, Sara H. Al Hadidi, Khalid Al Ansari and Hadi M. Yassine

    Citation: BMC Microbiology 2020 20:54

    Content type: Research article

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  19. The dogma that urine is sterile in healthy individuals has been overturned by recent studies applying molecular-based methods. Mounting evidences indicate that dysbiosis of the urinary microbiota is associated...

    Authors: Jing Xie, Jian-sheng Huang, Xiang-jiang Huang, Jun-ming Peng, Zhou Yu, Ye-qing Yuan, Ke-feng Xiao and Ji-nan Guo

    Citation: BMC Microbiology 2020 20:41

    Content type: Research article

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  20. Klebsiella pneumoniae is considered the most clinically relevant species of Enterobacteriaceae, known to cause severe infections including liver abscesses. To the best of our knowledge, a large proportion of iron...

    Authors: Tao Chen, Guofeng Dong, Siqin Zhang, Xiucai Zhang, Yajie Zhao, Jianming Cao, Tieli Zhou and Qing Wu

    Citation: BMC Microbiology 2020 20:36

    Content type: Research article

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  21. Bergeyella cardium infection is becoming increasingly prevalent in patients with infective endocarditis, suggesting its significance in disease pathogenesis. However, few studies have fully characterized this spe...

    Authors: Hongwei Pan, Wei Li, Enhua Sun and Yi Zhang

    Citation: BMC Microbiology 2020 20:32

    Content type: Research article

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  22. Some strains of Bacteroides fragilis species are associated with diarrhea as a result of enterotoxin production (bft or fragilysin). Fragilysin is activated by C11 protease (fpn) and together with C10 protease (b...

    Authors: Wafaa Jamal, Fatima Bibi Khodakhast, Ameerah AlAzmi, Jόzsef Sόki, Ghayda AlHashem and Vincent O. Rotimi

    Citation: BMC Microbiology 2020 20:14

    Content type: Research article

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  23. The exosporium of the anthrax-causing Bacillus anthracis endospores display a tetrasaccharide composed of three rhamnose residues and an unusual sugar termed anthrose. Anthrose is a proposed potential target for ...

    Authors: Diansy Zincke, Michael H. Norris, Berzhan Kurmanov, Ted L. Hadfield and Jason K. Blackburn

    Citation: BMC Microbiology 2020 20:6

    Content type: Methodology article

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  24. Antimicrobial combinations have been proven as a promising approach in the confrontation with multi-drug resistant bacterial pathogens. In the present study, we identify and characterize a synergistic interact...

    Authors: Vuong Van Hung Le, Catrina Olivera, Julian Spagnuolo, Ieuan G. Davies and Jasna Rakonjac

    Citation: BMC Microbiology 2020 20:5

    Content type: Research article

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  25. Trueperella pyogenes is one of the most clinically imperative bacteria responsible for severe cases of mastitis and metritis, particularly in postpartum dairy cows. The bacterium has emergence of antibiotic resis...

    Authors: Mobin Rezanejad, Sepideh Karimi and Hassan Momtaz

    Citation: BMC Microbiology 2019 19:305

    Content type: Research article

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  26. Pneumococcus is exposed to a variety of temperature and oxygen levels in the upper respiratory tract and as it invades the lung, tissues, and blood. We sought to determine the effect of environmental variabili...

    Authors: Adrienn Tóthpál, Katherine Desobry, Shreyas S. Joshi, Anne L. Wyllie and Daniel M. Weinberger

    Citation: BMC Microbiology 2019 19:304

    Content type: Research article

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  27. Treatment of P. aeruginosa wound infection is challenging due to its inherent and acquired resistance to many conventional antibiotics. Cationic antimicrobial peptides (CAMPs) with distinct modes of antimicrobial...

    Authors: Ming Yang, Chunye Zhang, Sarah A. Hansen, William J. Mitchell, Michael Z. Zhang and Shuping Zhang

    Citation: BMC Microbiology 2019 19:293

    Content type: Research article

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  28. Human brucellosis has become a severe public health problem in China’s Guangxi Province, and there has been higher prevalence of brucellosis in this region after 2010. Both multiple locus variable-number tande...

    Authors: Zhi-guo Liu, Miao Wang, Hong-yan Zhao, Dong-ri Piao, Hai Jiang and Zhen-jun Li

    Citation: BMC Microbiology 2019 19:292

    Content type: Research article

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  29. Pseudomonas aeruginosa is a nosocomial pathogen that causes severe infections in immunocompromised patients. Biofilm plays a significant role in the resistance of this bacterium and complicates the treatment of i...

    Authors: Maryam Banar, Mohammad Emaneini, Reza Beigverdi, Rima Fanaei Pirlar, Narges Node Farahani, Willem B. van Leeuwen and Fereshteh Jabalameli

    Citation: BMC Microbiology 2019 19:291

    Content type: Research article

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  30. Blood stream infections (BSIs) are a major cause of morbidity and mortality. The time from taking blood cultures to obtain results of antibiotic sensitivity can be up to five days which impacts patient care. T...

    Authors: Vanesa Anton-Vazquez, Samuel Adjepong, Cristina Suarez and Timothy Planche

    Citation: BMC Microbiology 2019 19:268

    Content type: Research article

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  31. The application of matrix-assisted laser desorption/ionization time of flight (MALDI-TOF) mass spectrometry (MS) to microbial identification has allowed the development of rapid methods for identification of m...

    Authors: Walter Florio, Susanna Cappellini, Cesira Giordano, Alessandra Vecchione, Emilia Ghelardi and Antonella Lupetti

    Citation: BMC Microbiology 2019 19:267

    Content type: Methodology article

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  32. The increase and spread of virulent-outbreak associated, methicillin and vancomycin resistant (MRSA/VRSA) Staphylococcus aureus require a better understanding of the resistance and virulence patterns of circulati...

    Authors: Cecilia Kyany’a, Justin Nyasinga, Daniel Matano, Valerie Oundo, Simon Wacira, Willie Sang and Lillian Musila

    Citation: BMC Microbiology 2019 19:245

    Content type: Research article

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  33. In light of rampant childhood diarrhoea, this study investigated bacterial pathogens from human and non-human sources in an urban informal settlement.

    Authors: John Bosco Kalule, Anthony M. Smith, Mjikisile Vulindhlu, Nomsa P. Tau, Mark P. Nicol, Karen H. Keddy and Lourens Robberts

    Citation: BMC Microbiology 2019 19:244

    Content type: Research article

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  34. Mycoplasma hyorhinis (Mhr) is the etiologic agent of lameness and polyserositis in swine. P37 is a membrane protein of Mhr that may be an important immunogen and is a potential target for diagnostic development. ...

    Authors: Hongzhen Zhu, Yanwu Wei, Liping Huang, Dan Liu, Yongxing Xie, Deli Xia, Haiqiao Bian, Li Feng and Changming Liu

    Citation: BMC Microbiology 2019 19:242

    Content type: Research article

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  35. Detection of ceftazidime/avibactam (CAZ/AVI) antibacterial activity is absolutely vital with the rapid growth of carbapenem resistant Enterobacteriaceae (CRE). But now, there is no available automated antimicrobi...

    Authors: Xianggui Yang, Dan Wang, Qin Zhou, Fang Nie, Hongfei Du, Xueli Pang, Yingzi Fan, Tingting Bai and Ying Xu

    Citation: BMC Microbiology 2019 19:240

    Content type: Research article

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  36. To evaluate the antibiotic resistance patterns of uropathogens isolated from adult women with acute community-acquired (CA) uncomplicated cystitis.

    Authors: Jamaan Al-Zahrani, Khaled Al Dossari, Ahmed H. Gabr, Abul-fotouh Ahmed, Saad Abdulrahman Al Shahrani and Sameer Al-Ghamdi

    Citation: BMC Microbiology 2019 19:237

    Content type: Research article

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  37. Porcine enzootic pneumonia is a worldwide problem in swine production. The infected host demonstrates a respiratory disease whose etiologic agent is Mycoplasma hyopneumoniae (Mhp). A total of 266 lung samples wit...

    Authors: Viviane Sisdelli Assao, Thalita Moreira Scatamburlo, Elaine Nery Araujo, Marcus Rebouças Santos, Carlos Eduardo Real Pereira, Roberto Maurício Carvalho Guedes, Gustavo Costa Bressan, Juliana Lopes Rangel Fietto, Yung-Fu Chang, Maria Aparecida Scatamburlo Moreira and Abelardo Silva-Júnior

    Citation: BMC Microbiology 2019 19:234

    Content type: Research article

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    The Correction to this article has been published in BMC Microbiology 2019 19:258

  38. We aimed to determine the evolutionary pathways of rifampicin resistance in Staphylococcus aureus, and the impact of resistance mutations in the rpoB gene on fitness.

    Authors: Chong Wang, Renchi Fang, Beibei Zhou, Xuebin Tian, Xiucai Zhang, Xiangkuo Zheng, Siqin Zhang, Guofeng Dong, Jianming Cao and Tieli Zhou

    Citation: BMC Microbiology 2019 19:220

    Content type: Research article

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  39. Shiga toxin-producing Escherichia coli (STEC) are emerging foodborne pathogens that are public health concern. Cattle have been identified as the major STEC reservoir. In the present study, we investigated the pr...

    Authors: Ruyue Fan, Kun Shao, Xi Yang, Xiangning Bai, Shanshan Fu, Hui Sun, Yanmei Xu, Hong Wang, Qun Li, Bin Hu, Ji Zhang and Yanwen Xiong

    Citation: BMC Microbiology 2019 19:213

    Content type: Research article

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  40. Escherichia coli has found to be the predominant uropathogen (50–90%) in uncomplicated, community acquired urinary tract infection (UTI). Uropathogenic Escherichia coli (UPEC) express a multitude of virulence fac...

    Authors: Chhaya Shah, Ratna Baral, Bijay Bartaula and Lok Bahadur Shrestha

    Citation: BMC Microbiology 2019 19:204

    Content type: Research article

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  41. Salmonella has been considered as one of the most important foodborne pathogens that threatened breeding industry and public health. To investigate the prevalence and characterization of Salmonella isolated from ...

    Authors: Jie Yang, Zijing Ju, Yi Yang, Xiaonan Zhao, Zhiyu Jiang and Shuhong Sun

    Citation: BMC Microbiology 2019 19:202

    Content type: Research article

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  42. Candidatus Neoehrlichia mikurensis is an emerging tick-borne pathogen. It is widely distributed in Ixodes ricinus ticks in Europe, but knowledge of its distribution in Norway, where I. ricinus reaches its norther...

    Authors: Andrew Jenkins, Cecilie Raasok, Benedikte N. Pedersen, Kristine Jensen, Åshild Andreassen, Arnulf Soleng, Kristin Skarsfjord Edgar, Heidi Heggen Lindstedt, Vivian Kjelland, Snorre Stuen, Dag Hvidsten and Bjørn-Erik Kristiansen

    Citation: BMC Microbiology 2019 19:199

    Content type: Research article

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    The Correction to this article has been published in BMC Microbiology 2020 20:9

  43. The rise of methicillin-resistant Staphylococcus aureus (MRSA) is a global health concern. Paucity of data on MRSA carriage prevalence and diagnostic methods in resource-limited settings hampers efforts to define...

    Authors: A. Ayebare, L. M. Bebell, J. Bazira, S. Ttendo, V. Katawera, D. R. Bangsberg, M. J. Siedner, P. G. Firth and Y. Boum II

    Citation: BMC Microbiology 2019 19:194

    Content type: Research article

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  44. Human skin is an appropriate environment for the growth of different types of microbes that may inhabit the skin as commensal flora. This study aims at identifying the diversity of skin microbiota in healthy S...

    Authors: Ashwag Shami, Samiah Al-Mijalli, Pisut Pongchaikul, Ahmed Al-Barrag and Samah AbduRahim

    Citation: BMC Microbiology 2019 19:189

    Content type: Research article

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  45. Group B Streptococcus (GBS) is a leading cause of early-onset disease (EOD) and late-onset disease (LOD) in infants. We sought to investigate the antibiotic susceptibility profiles, resistance genes, virulence-re...

    Authors: Benqing Wu, Jinzhen Su, Li Li, Weiyuan Wu, Jingsong Wu, Yuemei Lu, Wenqing Li, Jin’e Cheng and Xunhong Liang

    Citation: BMC Microbiology 2019 19:185

    Content type: Research article

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  46. Early pathogen detection and identification are crucial for an effective and targeted antibiotic therapy in patients suffering from blood stream infection. Molecular diagnostic methods can accelerate pathogen ...

    Authors: Matthias Pilecky, Anita Schildberger, Ludwig Knabl, Dorothea Orth-Höller and Viktoria Weber

    Citation: BMC Microbiology 2019 19:180

    Content type: Methodology article

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  47. Clarithromycin-resistance is becoming a global health concern in the treatment of Helicobacter pylori (H. pylori). The mutant prevention concentration (MPC) represent the propensities of antimicrobial agents to s...

    Authors: Zi-Han Feng, Ling Fan, Jing Yang, Xing-Yue Huo, Yan Guo, Yi Zhang and Chun-Hui Lan

    Citation: BMC Microbiology 2019 19:176

    Content type: Research article

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