Table 2 Distribution Antimicrobial Gene Clusters Identified on Plasmid Contigs
From: The role of plasmids in carbapenem resistant E. coli in Alameda County, California
Resistance Group | Resistance Type | AMR Gene Cluster | Contig Total | Sequence Types (n) |
|---|---|---|---|---|
β-lactamase | β-lactamase | bla CTX−M−15 | 11 | 131 (3), 167 (2), 405 (2), 410 (2), 69, 345 |
bla CTX−M−15, bla TEM−1B | 1 | 345 | ||
bla CTX−M−27 | 1 | 10 | ||
bla CTX−M−55 | 3 | 354 (2), UIST* | ||
bla CTX−M−65 | 1 | 10 | ||
bla CMY−138 | 1 | 131 | ||
bla CMY−140 | 1 | 69 | ||
bla CMY−145 | 4 | 6870 (3), 167 | ||
bla CMY−2 | 4 | 648, 963, 38, UIST* | ||
bla CMY−42 | 8 | 90 (4), 410 (2), 648, 405 | ||
bla CMY−6 | 1 | 405 | ||
bla OXA−1 | 1 | 405 | ||
bla SHV−12 | 1 | UIST* | ||
bla TEM−1B | 14 | 410 (2), 131 (2), 10 (2), 648, 69, 345, 156, 1193, 38, 144, 73, 405 | ||
bla TEM−1 C | 1 | 404 | ||
bla TEM−30 | 1 | 38 | ||
β-lactamase, Quinolone | bla CTX−M−15, qnrS1 | 1 | 38 | |
β-lactamase, Aminoglycoside | bla TEM−1B, rmtB | 3 | 167 (2), 405 | |
blaOXA−1, aac’(6’)-Ib-cr | 6 | 345 (3), 90 (2), 167 (2) | ||
β-lactamase, Aminoglycoside, Sulfonamide | bla TEM−1B, aph(3’’)-Ib, aph(6)-Id, sul2 | 5 | 69 (2), 345, 354, 457 | |
β-lactamase, Aminoglycoside, Macrolide, Sulfonamide | blaCMY−2, aac(3)-VIa, ant(3’’)-Ia, mef(C), mph(G), sul1, sul2 | 1 | UIST* | |
Carbapenemase | Carbapenemase | bla KPC−2 | 1 | 131 |
bla NDM−1 | 2 | 131 | ||
bla NDM−5 | 6 | 6870 (3), 167, 405, 10 | ||
bla OXA−48 | 1 | 131 | ||
Carbapenemase, Quinolone | blaOXA−181, qnrS1 | 5 | 410 (3), 156, UIST* | |
Carbapenemase, Aminoglycoside, Sulfonamide, Trimethoprim | blaNDM−1, aadA2, sul1, dfrA12 | 2 | 90 | |
blaNDM−5, aadA2, sul1, dfrA12 | 3 | 167 (2), 405 | ||
blaNDM−5, aadA5, sul1, dfrA17 | 1 | 405 |