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Table 5 Phenotypic-genotypic correlation of antibiotic resistance in LAB isolates from human and Nigerian fermented food sources

From: Antibiotic resistance in potential probiotic lactic acid bacteria of fermented foods and human origin from Nigeria

Isolates

Antibiotics Resistance Phenotype

Resistance genes detected by PCR

Lacticaseibacillus casei 3ST2

CX, CMZ, CAZ; COT, K, FC, TOB; MET; MO, NX, NA, GAT; P, AMC; TEI, VA

aac(6’)-Ii, ermB, ermC, tetM, vanE, parC

Lacticaseibacillus casei 3ST5

CD; CX, CMZ, CAZ; CIP, FC, GEN, K, PB, TOB, MET, MO, NX, NA, GAT, P, AMC, TEI, VA

aac(6’)-Ii, ermB, parC

Lacticaseibacillus casei 3ST7

CD, CX, CMZ, CAZ, CIP, TR, FC, GEN, K, PB, TOB, MET, MO, NX, NA, GAT, P, AMC, TEI, VA

tetM

Lacticaseibacillus paracasei 3ST3

CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MET, NX, NA, GAT, TEI, VA

parC

Lactiplantibacillus pentosus 8ST5

CD, CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MRP, MET, MO, NX, NA, GAT, P, TEI, VA, TE

vanE, parC

Lactiplantibacillus plantarum 15ST2

AZM, CD, CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MET, MO, NX, NA, GAT, TEI, VA

parC

Lacticaseibacillus paracasei 3BM4

CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MET, MO, NX, NA, P, TEI, VA

aac(6’)-Ii, vanE, parC

Lactiplantibacillus plantarum 3BM1

AZM, CD, CX, CMZ, CAZ, CIP, GEN, R, PB, TOB, MET, MO, NX, NA, GAT, P, TEI, VA, TE

ermB, ermC, vanE, parC

Lacticaseibacillus casei 8BM6

CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MET, MO, NX, NA, TEI, VA

aac(6’)-Ii, ermB, ermC, int-Tn(Tn916)-Tn1545, tetM, vanE, parC

Levilactobacillus brevis 8BM9

AZM, CD, CX, CMZ, CAZ, CIP, GEN, K, PB, TOB, MET, NX, NA, GAT, TEI, VA

ermC, tetM, vanE, parC

Lacticaseibacillus casei GR4

CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MET, MO, NX, NA, P, TEI, VA

aac(6’)-Ii, vanE, parC

Levilactobacillus brevis GR2

AZM, CD, CX, CMZ, CAZ, CIP, FC, K, PB, TOB, MET, MO, NX, NA, P, TEI, VA

aac(6’)-Ii, ermB, ermC, aph3IIIa, parC

Levilactobacillus brevis GR5

CX, CMZ, CAZ, CIP, FC, K, PB, TOB, MET, MO, NX, NA, GAT, P, TEI, VA

parC

Lacticaseibacillus paracasei GR11

AZM, CD, CX, CMZ, CAZ, CIP, COT, GEN, K, PB, TOB, MRP, MET, NX, NA, GAT, TEI, VA, TE

tetM, vanE, parC

Levilactobacillus brevis GR29

CD, CX, CMZ, CAZ, CIP, FC, K, PB, TOB, MET, MO, NX, NA, GAT, TEI, VA

vanE, parC

Lacticaseibacillus casei GR27

CD, CX, CMZ, CAZ, FC, K, TOB, MET, MO, NX, NA, TEI, VA

aac(6’)-Ii, vanE, parC

Lacticaseibacillus casei GR32

CD, CX, CMZ, CAZ, FC, GEN, K, PB, TOB, MET, MO, NX, NA, GAT, P, AMC, TEI, VA

aac(6’)-Ii, ermB, ermC, parC

Lacticaseibacillus paracasei GR12

CX, CMZ, CAZ, CIP, GEN, K, PB, TOB, MO, NX, NA, GAT, AMC, TEI, VA

aac(6’)-Ii, tetM, vanE, parC

Levilactobacillus brevis GR13

AZM, CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MET, MO, NX, NA, GAT, TEI, VA

parC

Lacticaseibacillus casei KN3

CD, CX, CMZ, CAZ, CIP, TR, GEN, K, PB, TOB, MET, MO, NX, NA, GAT, TEI, VA, TE

vanE

Levilactobacillus brevis KN9

AZM, CX, CMZ, CAZ, CIP, COT, TR, GEN, K, TOB, MRP, MET, MO, NX, NA, GAT, TEI, VA, TE

vanE

Lacticaseibacillus casei KN6

CD, CX, CMZ, CAZ, FC, GEN, K, PB, TOB, MET, MO, NX, NA, P, TEI, VA

aac(6’)-Ii, ermB, ermC, parC

Lacticaseibacillus paracasei BK4

CD, CX, CMZ, CAZ, FC, GEN, K, PB, TOB, MET, MO, NX, NA, TEI, VA

aac(6’)-Ii, ermC, tetM, vanE, parC

Levilactobacillus brevis BK8

CD, CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MET, MO, NX, NA, GAT, AMC, TEI, VA

aac(6’)-Ii, vanE

Lacticaseibacillus paracasei PT1

CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MET, MO, NX, NA, GAT, P, TEI, VA

aac(6’)-Ii, ermC, vanE

Lacticaseibacillus casei AK1

CD, CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MRP, MET, MO, NX, NA, GAT, P, AMC, TEI, VA, TE

vanE, parC

Lacticaseibacillus casei AK5

CX, CMZ, CAZ, CIP, FC, GEN, K, PB, TOB, MRP, MET, MO, NX, NA, GAT, P, AMC, TEI, VA

aac(6’)-Ii, tetM, vanE, parC

Lacticaseibacillus paracasei NON4

CD, CX, CMZ, CAZ, CIP, FC, K, PB, TOB, MET, MO, NX, NA, GAT, P, AMC, TEI, VA

ermB, parC