Table 4 Antimicrobial resistance and virulence genes identified by WGS among the carbapenem resistant E. coli isolates

CREC-17

rmtB, aadA2

bla_OXA-181, bla_NDM-5, bla_CMY-42, bla_TEM-1,

–

erm(B),mph(A)

qnrS1, gyrA (S83L, D87N), parC (S80I), parE (S458A)

sul1

dfrA12

–

fyuA, irp2, air, eilA, kpsE, yfcV, lpfA, gad, chuA, traT, terC

CREC-18

aadA5, aph(3″)-Ib, aph(6)-Id

bla_NDM-5, bla_OXA-1, bla_CTX-M-15,

catA1, catB3

mph(A)

aac(6′)-Ib-cr

gyrA (S83L, D87N), parC (S80I), parE (S458A)

sul1

dfrA17

tetA

fyuA, irp2, hylE, csgA, yehA, yehB, yehC, yehD, hha gad, iss, fdeC, traT terC

CREC-19

aac(6′)-Ib3, rmtC, aadA2

bla_NDM-1, bla_CMY-145, bla_CTX-M-15,

–

erm(B), mph(A)

qnrS1, gyrA (S83L, D87N), parC (S80I), parE (S458A)

sul1

dfrA12

tetA

iucC, iutA, hlyE, csgA, yehB, yehC, yehD,hha, capU, gad, iss, fdeC, hra, terC

CREC-20

aac(3)-IId, aph(3′)-Ia, aadA1,aadA2

bla_NDM-5, bla_CTX-M-15

cmlA1

mph(A)

gyrA (S83L, D87N), parC (S80I, E84G)

sul1, sul3

dfrA12

–

hylE, csgA, shiA, sitA, yehA, yehB, yehC, colE8, colE2, fimH, capU, gad, fdeC, hra, traT, traJ, terC