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Table 1 The dominant microorganism in the four planting patterns at the genus level. CK represents the soil samples before cotton planting, and Rhizosphere represent the rhizosphere soil samples of diseased plants. C represented cotton monoculture, CW represented cotton-wheat intercropping, CG represented cotton-garlic intercropping, CO represented cotton-onion intercropping

From: The effects and interrelationships of intercropping on Cotton Verticillium wilt and soil microbial communities

 

Planting modes

Dominant microorganisms (Top 5)

Fungi

Bacteria

CK

C

GibellulopsisMortierellaAscomycotaHumicola、Haematonectria

Gp6、Bacteria_unclassified、GemmatimonasSphingomonas、Pontibacter

CW

PodosporaSpizellomycesGibberellaCladorrhinum、Dokmaia

Gp6、Bacteria_unclassified、GemmatimonasSphingomonas、Pseudomonas

CO

GibellulopsisMortierellaPyronemataceaeHumicolaSpizellomyces

Gp6、Bacteria_unclassified、Gemmatimonas、Gp4、Pseudomonas

CG

GibellulopsisMortierellaHumicolaAlternariaStephanonectria

Gp6、Bacteria_unclassified、GemmatimonasSphingomonas、Pseudomonas

Rhizosphere

C

Mortierella、GibellulopsisHumicola、Haematonectria、Chaetomium

Gp6、Bacteria_unclassified、GemmatimonasSphingomonas、Gp4

CW

Gibellulopsis、Gibberella、Humicola、Cercophora、Sordariomycetes

Gp6、Bacteria_unclassified、GemmatimonasSphingomonas、Gp4

CO

Gibellulopsis、Fusarium、Stachybotrys、Alternaria、Davidiella

Gp6、Bacteria_unclassified、GemmatimonasSphingomonas、Gp4

CG

Mortierella、GibellulopsisSpizellomyces、Humicola、Ascomycota

Gp6、Bacteria_unclassified、GemmatimonasSphingomonas、Gp4