Table 3 Mean relative abundance (%) of the top 20 genera and the most abundant species within each genus in women living with HIV and seronegative women with or without HR-HPV infection
SNW HPVN | SNW HPVP | WLWH HPVN | WLWH HPVP | |
|---|---|---|---|---|
Actinobacteria | ||||
Atopobium | 1.4 | 5.2 | 2.6 | 2.2 |
A. vaginae | 1.3 | 5.2 | 2.6 | 2.1 |
Gardnerella | 12.9 | 24.4 | 17 | 18 |
G. vaginae | 12.9 | 24.4 | 17 | 18 |
Alloscardia | 0 | 0 | 1.9 | 0 |
A. omnincolens | 0 | 0 | 1.9 | 0 |
Corynebacterium | 1.7 | 0.2 | 0.2 | 0.2 |
C. coyleae | 0.9 | 0 | 0 | 0 |
Firmicutes | ||||
Lactobacillus | 55.3 | 38 | 54.7 | 63.6 |
L. iners | 35.9 | 14.4 | 34.2 | 52.3 |
L. jensenii | 8.5 | 8.8 | 6.4 | 7 |
L. gasseri | 2 | 4.6 | 11.2 | 0.1 |
L. reuteri | 7.4 | 0.5 | 1.7 | 3.7 |
L. delbrueckii | 0 | 8.3 | 0 | 0 |
L. coleohominis | 1.5 | 1 | 0 | 0.2 |
L. johnsonii | 0 | 0.3 | 1.2 | 0 |
Bifidobacterium | 2.1 | 0 | 3.5 | 0 |
B. breve | 2.1 | 0 | 2.7 | 0 |
Shuttleworthia | 2 | 0 | 0 | 6.6 |
Mycoplasma | 0.1 | 6.7 | 0.5 | 0 |
M. hominis | 0.1 | 6.7 | 0 | 0 |
Ureaplasma | 0.1 | 7.2 | 0.5 | 0.1 |
U. parvum | 0.1 | 7.2 | 0.1 | 0.1 |
U. urealyticum | 0 | 0 | 0.4 | 0 |
Megasphaera | 0.7 | 1 | 0.5 | 1.1 |
Dialister | 2 | 1 | 0.6 | 0.4 |
D. propionicifaciens | 0.6 | 0.1 | 0.5 | 0.2 |
Peptoniphilus | 0.8 | 0.1 | 0.7 | 0 |
Finegoldia | 1 | 0.1 | 0.5 | 0.1 |
Streptococcus | 1.7 | 0.1 | 0.4 | 0 |
S. anginosus | 1.4 | 0.1 | 0.4 | 0 |
Anaerococcus | 1.3 | 0.1 | 0.7 | 0 |
A. mediterraneesis | 0.8 | 0.1 | 0.1 | 0 |
Veillonella | 0.1 | 0 | 1 | 0 |
V. montpellierensis | 0 | 0 | 0.7 | 0 |
Fastidiosipila | 0.6 | 0.3 | 0.1 | 0.2 |
Bacteroidetes | ||||
Prevotella | 10.6 | 8.7 | 9.6 | 3.1 |
P. bivia | 5.5 | 1.1 | 5.5 | 0.8 |
P. timonensis | 1.8 | 0.7 | 2.3 | 0.7 |
P. amnii | 1.5 | 2.4 | 0 | 0.1 |
P. buccalis | 0.5 | 3.7 | 0.5 | 0.8 |
Fusobacteria | ||||
Sneathia | 3.9 | 3.3 | 0.1 | 1.1 |
S. amnii | 3.6 | 3.2 | 0.1 | 0.9 |
Fusobacterium | 0.1 | 0 | 0.4 | 0 |
F. nucleatum | 0 | 0 | 0.4 | 0 |