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Table 1 Overview of placental microbiota studies that were based on 16S rRNA gene sequencing data and that were included in this critical review and re-analysis. The presented study characteristics include the: name of the first author(s); geographical location at which subjects were sampled; specific 16S rRNA gene hypervariable region that was targeted for sequencing; number of placentas sampled by mode of delivery and whether delivery was before (i.e., preterm) or after (i.e. term) 37 weeks; number of technical controls included to address potential background DNA contamination; and whether we were able to categorize placental samples based on mode of delivery, gestational age at delivery (i.e., before or after 37 weeks), and whether DECONTAM analysis could be performed to identify background DNA contaminants (i.e., N ≥ 6 technical controls included in the study) [97]. Square brackets indicate that available sample metadata did not allow for placentas to be grouped by gestational age at delivery.

From: Is there a placental microbiota? A critical review and re-analysis of published placental microbiota datasets

Study

Geographic

Location

16S rRNA gene hypervariable region

Cesarean

Vaginal

Technical Controls

Ability to group by

Ability to run DECONTAM

Term

Preterm

Term

Preterm

Delivery

Gestational Age

de Goffau Part Ib

Cambridge, UK

V1-V2

80

0

0

0

47

X

X

X

Lauder

Philadelphia, PA, USA

V1-V2

1

0

5

0

39

X

X

X

Leiby

Philadelphia, PA, USA

V1-V2

1

5

19

15

103

X

X

X

Olomu

Lansing, MI, USA

V4

47a

0

0

0

131

X

X

X

Parnell

St. Louis, MO, USA

V4

34

0

23

0

21

X

X

X

Theisc

Detroit, MI, USA

V4

29a

0

0

0

43

X

X

X

Theis, Winters

Detroit, MI, USA

V4

28

14

21

6

12

X

X

X

Sterpu

Stockholm, Sweden

V6-V8

50a

0

26

0

6

X

X

X

Dinsdale

South Hedland, Australia

V4

[19]

[31]

8

X

 

X

Tang

Shanghai, China

V3-V4

15a

0

0

0

0

X

X

 

Liu

Kunming, China

V4-V5

42

0

36

0

0

X

X

 

Gomez-Arango

Brisbane, Australia

V6-V8

16a

0

20

0

0

X

X

 

Younge

Durham, NC, USA

V4

5a

5

0

0

0

X

  

Leon

London, England, UK

V5-V7

[136]

[120]

21

  

X

Seferovic

Houston, TX, USA

V4

26

8

0

18

2

   
  1. a Indicates that placental samples were delivered without labor
  2. b Analyzed data are from the Cohort 1 component of the study
  3. c Analyzed data are from the nested PCR component of the study