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Fig. 2 | BMC Microbiology

Fig. 2

From: Genomic landscape of the emerging XDR Salmonella Typhi for mining druggable targets clpP, hisH, folP and gpmI and screening of novel TCM inhibitors, molecular docking and simulation analyses

Fig. 2

Evolutionary relationships of taxa: The evolutionary history was inferred using the Neighbor-Joining method [49] for this unrooted tree. The bootstrap consensus tree inferred from 1000 replicates is taken, with two main clusters, to represent the evolutionary history of the taxa analyzed. Branches corresponding to partitions reproduced in less than 50% bootstrap replicates are collapsed. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates) are shown next to the branches. The evolutionary distances were computed using the Poisson correction method and are in the units of the number of amino acid substitutions per site [50]. This analysis involved 8 amino acid sequences. All ambiguous positions were removed for each sequence pair (pairwise deletion option). There was a total of 479 positions in the final datasets. Evolutionary analyses were conducted in MEGA (v10) [48]

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