Transcriptomics and co-expression network analysis revealing candidate genes for the laccase activity of Trametes gibbosa

Table 1 Annotations of genes of interest in two modules

Module	Gene ID	Gene_name	Pfam_annotation	Swiss_Prot_annotation
Turquoise	gene_61	jgi.p\|Tragib1\|1,414,099	Sir2 family	NAD-dependent protein deacetylase hst4
	gene_8826	jgi.p\|Tragib1\|1,387,922	SKIP/SNW domain	Pre-mRNA-processing protein 45
	gene_4369	jgi.p\|Tragib1\|1,316,018	DNA-directed RNA polymerase III subunit Rpc31	–
	gene_8912	jgi.p\|Tragib1\|1,326,595	IPP transferase	tRNA dimethylallyltransferase
	gene_5464	jgi.p\|Tragib1\|1,418,634	CybS, succinate dehydrogenase cytochrome B small subunit	Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial
	gene_9218	jgi.p\|Tragib1\|1,421,912	–	Adenylate-forming reductase 03,009
	gene_7458	jgi.p\|Tragib1\|1,323,325	Maintenance of mitochondrial morphology protein 1	Maintenance of mitochondrial morphology protein 1
Blue	gene_8826	jgi.p\|Tragib1\|1,387,922	SKIP/SNW domain	Pre-mRNA-processing protein 45
	gene_7458	jgi.p\|Tragib1\|1,323,325	Maintenance of mitochondrial morphology protein 1	Maintenance of mitochondrial morphology protein 1
	gene_61	jgi.p\|Tragib1\|1,414,099	Sir2 family	NAD-dependent protein deacetylase hst4
	gene_1741	jgi.p\|Tragib1\|1,311,301	Multicopper oxidase	Laccase-3
	gene_11087	jgi.p\|Tragib1\|1,400,843	SNF2 family N-terminal domain; Zinc finger, C3HC4 type	Uncharacterized ATP-dependent helicase C23E6.02

ISSN: 1471-2180