Table 4 Assembly summary from method with the MinION reads only. This table also compares the alignment identity and identified CDS from the hybrid assembly and the assembly with the MinION reads only
Isolates | Chromosome size (bp) | Identity distance compared to hybrid method (%) | Total no. of plasmids | Plasmid size(s) (kb) | CDS | $Same identical CDS compared to hybrid method (%) | CRISPR | rRNA | tRNA | tmRNA | serotype |
|---|---|---|---|---|---|---|---|---|---|---|---|
E1 | 4,909,388 | 4.14 | 8 (5*) | 380*; 104*; 39; 21*; 3*;1*; 1; 1 | 5093 | 98.83 | 3 | 22 | 88 | 1 | O2/O50:H6 |
E2 | 5,138,382 | 2.32 | 6 (5*) | 160*;124; 10*; 5*; 5*; 2* | 5964 | 98.10 | 2 | 22 | 97 | 1 | O123/ O186:H40 |
E3 | 4,701,615 | 0.54 | 1 | 109 | 4951 | 99.05 | 2 | 22 | 86 | 1 | O78:H9 |
E4 | 4,921,781 | 0.39 | 3 (2*) | 146; 119*; 5* | 4990 | 99.80 | 1 | 22 | 86 | 1 | O7:H4 |
E5 | 4,963,620 | 0.40 | 1 | 133 | 5243 | 98.93 | 2 | 22 | 89 | 1 | O No hit: H4 |
E6 | 4,876,192 | 3.05 | 2 (1*) | 182; 179* | 4950 | 99.44 | 2 | 22 | 92 | 1 | O84:H20 |
E7 | 5,177,108 | 1.50 | 2 | 136; 111 | 5613 | 98.84 | 2 | 22 | 87 | 1 | O78:H4 |
E8 | 4,816,950 | 25.85 | 6 (2*) | 155; 111; 68; 61; 11*; 10* | 4948 | 95.85 | 2 | 22 | 91 | 1 | O No hit:H11 |
E9 | 5,119,566 | 1.84 | 1 | 281 | 5959 | 98.10 | 2 | 22 | 93 | 1 | O18/O18ac:H49 |
E10 | 5,083,425 | 0.33 | 1 | 133 | 4946 | 99.89 | 1 | 22 | 95 | 1 | O2/O50:H4 |