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Fig. 3 | BMC Microbiology

Fig. 3

From: Genomic diversity, pathogenicity and antimicrobial resistance of Escherichia coli isolated from poultry in the southern United States

Fig. 3

The neighbor joining phylogenetic tree of 16S rRNA for the E. coli isolates from southern US poultry. In addition to the 10 E. coli isolates we collected for this study, E. coli genomes from GenBank (n = 1,463) were included in the analyses. Specifically, all 16sRNA from each genome was concatenated, and genetic distances were calculated by using CVTree (v3.0) [35], and the phylogenetic trees were calculated by using neighbor joining method [36]. Tree visualization was conducted using ggtree R package [37]

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BMC Microbiology

ISSN: 1471-2180

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