Table 2 Orthologous groups (OGs) unique to Pseudomonas syringae clade 2b-a. The significant OGs were determined by the GWAS conducted with Scoary. The annotation shows the function, domain or associated protein according to NCBI, InterProScan or Foldseek. The Cluster of orthologous groups of proteins (COG) category shows the protein function of the OGs as predicted by EggNOG-mapper. The region of genome plasticity (RGP) results from Fig. 6 are included to show where these OGs are positioned in the P. syringae 77-4C
From: Comparative genomics and genomic diversity of Pseudomonas syringae clade 2b-a in Australia
Orthologous groupa | Annotation/domain | RGP locationb | COG categoryc |
|---|---|---|---|
ycf3 | SMEK domain-containing protein | RGP_15 | D |
group_7141 | SEC-C domain containing protein | RGP_15 | S |
group_7142 | hypothetical protein | RGP_15 | - |
rep_2 | UvrD-helicase domain containing protein | RGP_15 | - |
group_7144 | hypothetical protein | RGP_15 | S |
group_7145 | TauD/TfdA family dioxygenase | RGP_15 | - |
group_7146 | hypothetical protein | RGP_15 | - |
ravA | ATPase | RGP_32 | - |
group_7115 | bpX5 domaind | RGP_32 | V |
group_7116 | 6ND4e | RGP_32 | - |
group_7117 | bpX6 domain containing protein | RGP_32 | S |
group_7138 | Restriction endonuclease subunit S | RGP_13 | - |
group_7206 | YrhB domain-containing protein | RGP_6 | L |
group_7088 | ATPase | RGP_18 | - |
group_7089 | DUFF2280 domain containing protein | RGP_18 | Q |
group_7091 | hypothetical protein | RGP_18 | - |
group_7092 | hypothetical protein | RGP_18 | - |
group_7179 | Excisionase | RGP_20 | S |
group_7180 | hypothetical protein | RGP_20 | - |
group_3605 | ATPase | RGP_20 | L |
group_7174 | hypothetical protein | RGP_3 | - |
group_7200 | hypothetical protein | Not available | S |