Comparative genomics and genomic diversity of Pseudomonas syringae clade 2b-a in Australia

BMC Microbiology

Table 1 Pseudomonas syringae phylogroup 2 cucurbit associated orthologous groups (OGs). The significant OGs were determined by the GWAS conducted with Scoary. OGs in white have been previously identified as cucurbit associated in a study by Newberry et al. [3]. The OG in grey was newly detected in this study. The annotation shows the function or associated protein according to NCBI. Sensitivity and specificity of the OG’s association to cucurbit hosts are shown as percentages

^aOrthologous group names were generated from Roary
^bSensitivity: percentage of cucurbit isolates with the gene present (true positive)
^cSpecificity: percentage of non-cucurbit isolates with the gene absent (true negative)
^dLocus tag Ga0170668_1061120 in Newberry et al.[3]
^eLocus tag Ga0170668_106332 in Newbery et al.[3]

ISSN: 1471-2180