From: Distribution, inducibility, and characterisation of prophages in Latilactobacillus sakei
Inducible Latilactobacillus sakei phages within this study: | |||||||||
---|---|---|---|---|---|---|---|---|---|
Phage | Predicted region by PHASTER (if multiple) | GC-content [%] | ORFs total | ORFs with unknown function | ORF-% unknown | Prophage length [kb] | Completeness (score) by PHASTER | Region position by PHASTER | Most common phage (gene hits) by PHASTER |
TMW 1.23 P1 | 39.9 | 52 | 24 | 46.2 | 39.3 | Intact (100) | contig 17: 1888–39,112 | PHAGE_Lister_2389_NC_003291 (12) | |
TMW 1.46 P1 | 40.8 | 57 | 25 | 43.9 | 39.6 | Intact (150) | 852,024–891,679 | PHAGE_Lactob_CL1_NC_028888 (7) | |
TMW 1.46 P2 a | 40.1 | 51 | 30 | 58.8 | 36.4 | Intact (100) | 1,197,847–1,227,163 | PHAGE_Lister_B025_NC_009812 (9) | |
TMW 1.1290 P1 | 40.2 | 54 | 25 | 46.3 | 38.0 | Intact (130) | contig 1: 45015–93,497 | PHAGE_Lactob_PL_1_NC_022757 (10) | |
TMW 1.1393 P1 | 40.6 | 54 | 26 | 48.1 | 34.7 | Intact (150) | contig 5: 69791–108,578 | PHAGE_Lactob_phig1e_NC_004305 (9) | |
TMW 1.1397 P1 | 39.0 | 62 | 21 | 33.9 | 38.4 | Intact (150) | contig 1: 442601–480,500 | PHAGE_Lactob_Lrm1_NC_011104(8) | |
φ-DJ1812 b (strain TMW 1.1398) | region 1 region 2 | 39.3 | 54 | 18 | 33.3 | 40.6 | Incomplete (50) Intact (130) | 774,846–805,244 805,573–828,066 | PHAGE_Brocho_NF5_NC_015252 (2) PHAGE_Lactob_LF1_NC_019486 (7) |
Other putatively intact Latilactobacillus sakei phages: | |||||||||
C21B P1 | 41.4 | 58 | 12 | 20.7 | 44.8 | Intact (150) | 346,775–391,586 | PHAGE_Lactob_A2_NC_004112 (8) | |
CBA3635 P1 | 39.6 | 66 | 22 | 33.3 | 43.3 | Intact (140) | 239,719–283,028 | PHAGE_Oenoco_phiS13_NC_023560 (16) | |
CBA3635 P2 | 39.7 | 53 | 13 | 24.5 | 51.3 | Intact (150) | 1,672,801–1,724,115 | PHAGE_Lister_B025_NC_009812 (10) | |
DS4 P1 c | 39.8 | 58 | 19 | 32.8 | 41.2 | Intact (150) | 645,922–687,133 | PHAGE_Entero_EFC_1_NC_025453 (4) | |
FAM18311 P1c | 40.5 | 55 | 9 | 16.4 | 55.0 | Intact (120) | 1,267,830–1,322,910 | PHAGE_Oenoco_phiS13_NC_023560 (14) | |
J54 P1 | 42.0 | 47 | 10 | 21.3 | 33.1 | Questionable (70) | 614,556–647,708 | PHAGE_Lactoc_50101_NC_031040 (15) | |
J64 P1 c | 39.7 | 53 | 11 | 20.8 | 39.8 | Intact (150) | 648,583–688,460 | PHAGE_Lactob_PL_1_NC_022757 (8) | |
J64 P2 c | 40.7 | 54 | 13 | 24.1 | 40.1 | Intact (150) | 887,011–927,148 | PHAGE_Lactob_phig1e_NC_004305 (9) | |
J64 P3 a | 40.5 | 36 | 10 | 27.8 | 30.4 | Intact (120) | 1,294,505–1,324,922 | PHAGE_Strept_315.4_NC_004587 (7) | |
J112 P1 b,3 | region 1 region 2 | 39.0 42.5 | 35 20 | 10 2 | 28.6 10.0 | 31.4 17.6 | Incomplete (50) Questionable (80) | 784,685–816,113 807,012–824,611 | PHAGE_Lister_LP_030_3_NC_024384 (2) PHAGE_Lactob_CL1_NC_028888 (5) |
LK-145 P1 c | 39.5 | 54 | 11 | 20.4 | 39.1 | Questionable (70) | 457,907–497,029 | PHAGE_Lactob_PLE2_NC_031036 (10) | |
LZ217 P1 c | 40.4 | 52 | 12 | 23.1 | 42.7 | Intact (150) | 941,734–984,525 | PHAGE_Lactob_phig1e_NC_004305 (8) | |
MFPB16A1401 P1 c | 40.4 | 51 | 12 | 23.5 | 37.1 | Intact(150) | 654,201–691,310 | PHAGE_Lactob_phig1e_NC_004305 (10) | |
MFPB19 P1 c | 39.6 | 48 | 10 | 20.8 | 37.6 | Intact(150) | 670,108–707,803 | PHAGE_Lactob_Lrm1_NC_011104 (9) | |
ob4.1 P1 a,2 | region 1 region 2 | 37.7 40.3 | 28 19 | 11 0 | 39.3 0.0 | 20.2 16.5 | Incomplete (20) Questionable (70) | 128,217–148,461 148,791–165,294 | PHAGE_Lister_B054_NC_009813 (3) PHAGE_Oenoco_phi9805_NC_023559 (16) |
ob4.1 P2 b | region 3 region 4 | 40.5 39.7 | 23 28 | 0 8 | 0.0 28.6 | 19.9 27.5 | Intact (130) Incomplete (10) | 1,509,399–1,529,314 1,522,108–1,549,633 | PHAGE_Lactob_LF1_NC_019486 (7) PHAGE_Lactob_Lrm1_NC_011104 (4) |
Probio65 P1 c,d | region 3 | 40.4 | 90 | 27 | 30.0 | 58.8 | Intact (150) | 1,994,946–2,053,762 | PHAGE_Lactob_phig1e_NC_004305 (9) |
Probio65 P2 c,d | region 1 region 3 | – | – | – | – | – | – | – | – |
TMW 1.411 P1 c,e | 40.4 | 24 | 5 | 20.8 | 18.6 | Intact (110) | QOSE01000002: 492–19,135 | PHAGE_Lactob_PL_1_NC_022757 (7) | |
WiKim0063 P1 c | 40.2 | 52 | 12 | 23.1 | 39.2 | Intact (150) | 355,716–394,962 | PHAGE_Lactob_phig1e_NC_004305 (10) | |
WiKim0072 P1 c | 40.7 | 60 | 16 | 26.7 | 41.9 | Intact (150) | 1,659,755–1,701,753 | PHAGE_Lactob_phig1e_NC_004305 (10) |