Fig. 1

M. bovis genotype 1 and 2 differences. A Whole genome tree of M. bovis and M. bovoculi constructed in EDGAR using 1220 genes per genome, 1,278,792 bp per genome, with CP087830 as a reference. B Whole genome tree of M. bovis constructed with Parsnp using 74% of CP030241 as a reference and viewed with Ginger. The alleles of 11,070 polymorphisms separate the two genotype clades. ANI values were calculated using the whole genome sequence of M. bovis type strain CCUG 2133 M. Hemolysin protein variant sequences are provided in Supplementary Fig. S1. Isoform sequences of PilA are provided in Supplementary Fig. S3. PilA protein variant sequences connected to serotypes are represented with letters whereas isoforms without corresponding serotypes are represented with numbers