Table 3 De novo CRISPR/Cas prediction with the help of CRISPRCasFinder
From: Prevalence of S. aureus and/or MRSA from seafood products from Indian seafood products
CRISPR_Id | CRISPR_Start | CRISPR_End | CRISPR_Length | Potential_Orientation (AT%) | Consensus_Repeat | Repeat_ID (CRISPRdb) | Conservation_Repeats (% identity) | Repeat_Length | Evidence_Level |
|---|---|---|---|---|---|---|---|---|---|
SRR538_1 | 682,402 | 682,501 | 99 | Unknown | AAGAGCCCCTAATTAATAAATTAAAAGGGG | R271 | 100 | 30 | 1 |
SRR538_2 | 768,363 | 768,447 | 84 | Forward | CACCCCAACTTGCATTGTCTGTAGAA | R1692 | 96.1 | 26 | 1 |
SRR538_3 | 826,136 | 826,215 | 79 | Reverse | CCGTCAGCTTCTGTGTTGGGGCCC | R2322 | 95.8 | 24 | 1 |
SRR538_4 | 875,258 | 875,343 | 85 | Unknown | AAAGTCAGCTTACAATAATGTGCAAGTTGG | Unknown | 96.6 | 30 | 1 |
SRR538_5 | 1,169,979 | 1,170,071 | 92 | Reverse | TAAGAAACAGTAATCAATAAATTGATAACT | R7515 | 100 | 30 | 1 |
SRR538_6 | 1,832,483 | 1,832,610 | 127 | Unknown | AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC | R441 | 97.3 | 38 | 1 |
SRR538_7 | 1,859,907 | 1,859,989 | 82 | Forward | TCTGTGTTGGGGCCCCGCCAACCTGCA | Unknown | 96.2 | 27 | 1 |
SRR538_8 | 2,058,028 | 2,058,117 | 89 | Reverse | CAACTTTAGTTGTTAGGGGCTCTT | R1624 | 91.6 | 24 | 1 |
SRR538_9 | 2,130,159 | 2,130,284 | 125 | Reverse | CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA | Unknown | 97.2 | 37 | 1 |