Skip to main content

Table 1 Sequencing information for ileal (IL) and cecal (CE) luminal (L) and mucosal (M) samplesa

From: Delayed access to feed early post-hatch affects the development and maturation of gastrointestinal tract microbiota in broiler chickens

 

Sequencing data

 

IL & CEb

IL-Lc

IL-Mc

CE-Lc

CE-Mc

Raw reads

Total

203,099

18,944,578

4,556,341

11,065,680

18,913,905

Mean

4,615

217,753

54,895

125,746

230,657

Reads after quality trimming

Total

12,568

6,841,576

1,764,019

2,612,896

7,437,805

Mean

285

78,639

21,253

29,692

90,704

Sequencing depth for analysis

119

1267

1357

2,899

11,510

  1. an = 6 for each time point and each section
  2. bSamples collected from -48 h to 4 h post-hatch from ileum and ceca
  3. cSamples collected from days 1 (24 h) to 14 (336 h) post-hatch