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Table 2 Summary of the specimens with hits to Spiroplasma based on screening with Kraken2 and MetaPhlAn2

From: One’s trash is someone else’s treasure: sequence read archives from Lepidoptera genomes provide material for genome reconstruction of their endosymbionts

Sample Number

Host Family

Host Species

Biosample

SRA Accession

Kraken2 (Number of reads)

MetaPhlAn2 (Number of reads)

Spiroplasma Clade

130

Lycaenidae

Jalmenus evagoras (Donovan, 1805)

SAMN08456344

SRR6679362

1152

-

NA

131

Nymphalidae

Danaus plexippus

SAMN02986443

SRR1549529

4014

III

132

Nymphalidae

Danaus plexippus (Linneaus, 1758)

SAMN02986460

SRR1552228

37,369

25,020

II

133

Nymphalidae

Danaus chrysippus (Linneaus, 1758)

SAMN02996390

SRR1552518

1147

 

III

134

Nymphalidae

Heliconius ethilla narcaea (Godart, 1819)

SAMN04410681

SRR3103847

22,556

I

135

Nymphalidae

Heliconius congener (Weymer, 1890)

SAMN04412542

SRR3102172

9891

3171

I

136

Nymphalidae

Heliconius erato petiverana (Doubleday, 1847)

SAMN05224118

SRR4032023

1054

I

137

Nymphalidae

Heliconius erato hydara (Hewitson, 1867)

SAMN05224153

SRR4032061

2840

I

138

Nymphalidae

Heliconius erato erato (Linnaeus, 1758)

SAMN05224160

SRR4032069

7202

13,008

I

139

Nymphalidae

Heliconius erato phyllis (Fabricius, 1775)

SAMN05224205

SRR4032004

13,243

4904

I

140

Nymphalidae

Heliconius erato emma (Riffarth, 1901)

SAMN08049958

SRR6313533

11,058

III

141

Nymphalidae

Heliconius erato favorinus (Hopffer, 1874)

SAMN08049959

SRR6313540

1005

NA

142

Nymphalidae

Danaus chrysippusa (Linneaus, 1758)

SAMN08826815

SRR6925894/ SRR6925895/ SRR6925896/ SRR6925897/ SRR6925899/ SRR6679360

36,983

-

III

143

Nymphalidae

Heliconius ismenius (Latreille, 1817)

SAMN09206389

SRR7162650

7817

2425

III

144

Nymphalidae

Heliconius hecale (Fabricius, 1776)

SAMN09206391

SRR7162652

43,795

13,919

I

145

Saturniidae

Antheraea yamamaia (Guérin-Méneville, 1861)

SAMN06758611

SRR5641446/ SRR5641447/ SRR5641448

6559

NA

  1. arepresent specimens that had more than one positive SRA accession, for these samples the numbers represented are across all SRA runs