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Table 2 Summary of the specimens with hits to Spiroplasma based on screening with Kraken2 and MetaPhlAn2

From: One’s trash is someone else’s treasure: sequence read archives from Lepidoptera genomes provide material for genome reconstruction of their endosymbionts

Sample Number Host Family Host Species Biosample SRA Accession Kraken2 (Number of reads) MetaPhlAn2 (Number of reads) Spiroplasma Clade
130 Lycaenidae Jalmenus evagoras (Donovan, 1805) SAMN08456344 SRR6679362 1152 - NA
131 Nymphalidae Danaus plexippus SAMN02986443 SRR1549529 4014 III
132 Nymphalidae Danaus plexippus (Linneaus, 1758) SAMN02986460 SRR1552228 37,369 25,020 II
133 Nymphalidae Danaus chrysippus (Linneaus, 1758) SAMN02996390 SRR1552518 1147   III
134 Nymphalidae Heliconius ethilla narcaea (Godart, 1819) SAMN04410681 SRR3103847 22,556 I
135 Nymphalidae Heliconius congener (Weymer, 1890) SAMN04412542 SRR3102172 9891 3171 I
136 Nymphalidae Heliconius erato petiverana (Doubleday, 1847) SAMN05224118 SRR4032023 1054 I
137 Nymphalidae Heliconius erato hydara (Hewitson, 1867) SAMN05224153 SRR4032061 2840 I
138 Nymphalidae Heliconius erato erato (Linnaeus, 1758) SAMN05224160 SRR4032069 7202 13,008 I
139 Nymphalidae Heliconius erato phyllis (Fabricius, 1775) SAMN05224205 SRR4032004 13,243 4904 I
140 Nymphalidae Heliconius erato emma (Riffarth, 1901) SAMN08049958 SRR6313533 11,058 III
141 Nymphalidae Heliconius erato favorinus (Hopffer, 1874) SAMN08049959 SRR6313540 1005 NA
142 Nymphalidae Danaus chrysippusa (Linneaus, 1758) SAMN08826815 SRR6925894/ SRR6925895/ SRR6925896/ SRR6925897/ SRR6925899/ SRR6679360 36,983 - III
143 Nymphalidae Heliconius ismenius (Latreille, 1817) SAMN09206389 SRR7162650 7817 2425 III
144 Nymphalidae Heliconius hecale (Fabricius, 1776) SAMN09206391 SRR7162652 43,795 13,919 I
145 Saturniidae Antheraea yamamaia (Guérin-Méneville, 1861) SAMN06758611 SRR5641446/ SRR5641447/ SRR5641448 6559 NA
  1. arepresent specimens that had more than one positive SRA accession, for these samples the numbers represented are across all SRA runs