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Table 1 Summary of the specimens with hits to Wolbachia based on Kraken2 and MetaPhlAn2 results

From: One’s trash is someone else’s treasure: sequence read archives from Lepidoptera genomes provide material for genome reconstruction of their endosymbionts

Sample Number Family Species Biosample SRA Accession Kraken2 (Number of reads) MetaPhlAn 2 (Number of reads)
Wolbachia Phage Wo
1 Adelidae Adela reaumurella (Linnaeus, 1758) SAMN08536812 SRR6727426 7705 1111 163,166
2 Depressariidae Depressaria pastinacellaa (Goeze, 1783) SAMN08712583 SRR6984048 / SRR6984049 / SRR6984052 / SRR6984053 /SRR6984054 1,794,372 75,297 934,134
3 Erebidae Hyphantria cunea (Drury, 1773) SAMN10290292 SRR8109452 5271 243
4 Erebidae Hyphantria cunea (Drury, 1773) SAMN10290285 SRR8109455 10,719 395
5 Gelechiidae Keiferia lycopersicella (Walsingham, 1897) SAMN10666979 SRR8386696 14,436 533 42,874
6 Gelechiidae Keiferia lycopersicella (Walsingham, 1897) SAMN10666981 SRR8386698 23,545 822 70,593
7 Gelechiidae Keiferia lycopersicella (Walsingham, 1897) SAMN10666980 SRR8386699 25,589 964 75,737
8 Gelechiidae Keiferia lycopersicella (Walsingham, 1897) SAMN10666976 SRR8386700 26,240 882 74,626
9 Gelechiidae Keiferia lycopersicella (Walsingham, 1897) SAMN10666977 SRR8386701 5676 218 15,557
10 Gelechiidae Keiferia lycopersicella (Walsingham, 1897) SAMN10666974 SRR8386708 15,323 420 42,046
11 Gelechiidae Keiferia lycopersicella (Walsingham, 1897) SAMN10666975 SRR8386709 13,604 353 37,698
12 Gelechiidae Phthorimaea operculella (Zeller, 1873) SAMN10666968 SRR8386702 58,341 2535 125,480
13 Gelechiidae Phthorimaea operculella (Zeller, 1873) SAMN10666969 SRR8386703 42,812 1808 90,756
14 Gelechiidae Phthorimaea operculella (Zeller, 1873) SAMN10666970 SRR8386704 47,813 2201 101,751
15 Gelechiidae Phthorimaea operculella (Zeller, 1873) SAMN10666971 SRR8386705 47,521 2321 78,887
16 Gelechiidae Phthorimaea operculella (Zeller, 1873) SAMN10666972 SRR8386706 42,526 1925 83,015
17 Gelechiidae Phthorimaea operculella (Zeller, 1873) SAMN10666967 SRR8386711 37,194 1894 78,586
18 Gelechiidae Tuta absoluta (Meyrick, 1917) SAMN10666962 SRR8386712 20,483 948 56,469
19 Gelechiidae Tuta absoluta (Meyrick, 1917) SAMN10666963 SRR8386713 47,837 2141 133,451
20 Gelechiidae Tuta absoluta (Meyrick, 1917) SAMN10666964 SRR8386714 51,727 2274 146,211
21 Gelechiidae Tuta absoluta (Meyrick, 1917) SAMN10666965 SRR8386715 53,957 2340 156,218
22 Gelechiidae Tuta absoluta (Meyrick, 1917) SAMN10666958 SRR8386716 50,877 2202 145,524
23 Gelechiidae Tuta absoluta (Meyrick, 1917) SAMN10666959 SRR8386717 56,249 2364 160,054
24 Gelechiidae Tuta absoluta (Meyrick, 1917) SAMN10666960 SRR8386718 90,669 3945 263,050
25 Gelechiidae Tuta absoluta (Meyrick, 1917) SAMN10666961 SRR8386719 42,398 1860 117,505
26 Geometridae Operophtera brumataa (Linnaeus, 1758) SAMN03121611 SRR1618545 / SRR1618582 / SRR1618581 490,973 18,035 1,171,280
27 Gracillariidae Cameraria ohridella (Deschka & Bimic, 1986) SAMN07172872 SRR5626452 1289 - 1543
28 Hesperiidae Udranomia orcinus (Felder & Felder, 1867) SAMN06232397 SRR7174560 11,407 52 10,690
29 Micropterigidae Micropterix facetella (Zeller, 1851) SAMN08536841 SRR6727435 391,265 1745 263,633
30 Noctuidae Chrysodeixis includens (Walker, 1858) SAMN06835216 SRR5754050 1287 35
31 Noctuidae Spodoptera litura (Fabricius, 1775) SAMN06187070 SRR5132392 3605 135 1500
32 Noctuidae Spodoptera litura (Fabricius, 1775) SAMN06187034 SRR5132393 1663 62 2057
33 Noctuidae Spodoptera litura (Fabricius, 1775) SAMN06187071 SRR5132396 2401 84 1428
34 Noctuidae Spodoptera litura (Fabricius, 1775) SAMN06187040 SRR5132402 5285 194 2935
35 Noctuidae Spodoptera litura (Fabricius, 1775) SAMN06187037 SRR5132403 1849 68 1287
36 Noctuidae Spodoptera litura (Fabricius, 1775) SAMN06187033 SRR5132404 229,970 1672 803,943
37 Noctuidae Spodoptera litura (Fabricius, 1775) SAMN06187043 SRR5132409 1773 65 -
38 Noctuidae Spodoptera litura (Fabricius, 1775) SAMN06187073 SRR5132419 1152 18 -
39 Noctuidae Spodoptera litura (Fabricius, 1775) SAMN06187030 SRR5132426 1678 54 1322
40 Noctuidae Spodoptera litura (Fabricius, 1775) SAMN06187076 SRR5132427 2383 79 -
41 Noctuidae Spodoptera litura (Fabricius, 1775) SAMN06187047 SRR5132432 2271 76 -
42 Noctuidae Spodoptera litura (Fabricius, 1775) SAMN06187032 SRR5132433 170,164 1114 617,094
43 Noctuidae Spodoptera litura (Fabricius, 1775) SAMN06187038 SRR5132437 6641 201 2529
44 Noctuidae Spodoptera litura (Fabricius, 1775) SAMN06187072 SRR5132442 395 141 1356
45 Nymphalidae Heliconius erato demophoon (Ménétriés, 1855) SAMN05224183 SRR4032094 1688 13 1442
46 Nymphalidae Heliconius erato demophoon (Ménétriés, 1855) SAMN08278546 SRR6432897 1,259,318 21,957
47 Nymphalidae Hypolimnas misippus (Linnaeus, 1764) SAMN10740678 SRR8549338 - - 1152
48 Nymphalidae Pararge aegeria (Linnaeus, 1758) SAMN02688782 SRR1190479 33,302 323 1,261,640
49 Nymphalidae Pararge aegeria (Linneaus, 1758) SAMN09760079 SRR7637637 27,561 310 1,033,664
50 Nymphalidae Pararge aegeria (Linneaus, 1758) SAMN09760078 SRR7637638 29,222 255 1,245,913
51 Nymphalidae Polygonia c-album (Linneaus, 1758) SAMN02688783 SRR1190476 146,109 1682 452,747
52 Papilionidae Parnassius apollo (Linneaus, 1758) SAMN08456343 SRR6679361 6463 -
53 Plutellidae Plutella australiana (Landry & Hebert, 2013) SAMN07626876 SRR6023624 254,213 2402 -
54 Plutellidae Plutella australiana (Landry & Hebert, 2013) SAMN08388765 SRR6505268 210,829 2090 661,700
55 Plutellidae Plutella australiana (Landry & Hebert, 2013) SAMN08388772 SRR6505269 318,891 2974 1,032,126
56 Plutellidae Plutella australiana (Landry & Hebert, 2013) SAMN08388766 SRR6505270 53,109 269 149,256
57 Plutellidae Plutella australiana (Landry & Hebert, 2013) SAMN08388767 SRR6505271 26,201 288 62,939
58 Plutellidae Plutella australiana (Landry & Hebert, 2013) SAMN08388768 SRR6505272 61,027 327 171,131
59 Plutellidae Plutella australiana (Landry & Hebert, 2013) SAMN08388762 SRR6505273 156,370 1532 386,427
60 Plutellidae Plutella australiana (Landry & Hebert, 2013) SAMN08388769 SRR6505274 84,147 825 207,246
61 Plutellidae Plutella Australiana (Landry & Hebert, 2013) SAMN08388764 SRR6505276 195,426 1155 524,931
62 Plutellidae Plutella Australiana (Landry & Hebert, 2013) SAMN08388771 SRR6505279 248,327 1429 870,067
63 Plutellidae Plutella australiana a (Landry & Hebert, 2013) SAMN08388770 SRR6505277 238,792 2363 1,146,122
64 Plutellidae Plutella xylostella (Linneaus, 1758) SAMN08388733 SRR6505226 - - 1727
65 Plutellidae Plutella xylostella (Linneaus, 1758) SAMN08388732 SRR6505227 2,345,019 9539 -
66 Tineidae Tineola bisselliella (Hummel, 1823) SAMN08536677 SRR6727411 1867 46 -
  1. arepresent specimens that had more than one positive SRA accession, for these samples the numbers represented are across all SRA runs