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Table 2 Number of occurrences and taxonomic assignment at the genus level for taxa that were either majorly detected in unit 1 or missing in unit 1 but observed in other units

From: Dynamic changes in fecal bacterial microbiota of dairy cattle across the production line

Avg. No. of Reads in Unit 1

Avg. No. of Reads in Unit 2

Sum of Avg. No. of Reads in other 10 Units

Phylum

Family

Genus

Genera majorly observed in unit 1

  330 (2.6%)

4

2

Bacteroidetes

Prevotellaceae

Prevotella_9

  157 (1.2%)

0

0

Bacteroidetes

Prevotellaceae

Prevotella_2

  102 (0.8%)

0

3

Bacteroidetes

Prevotellaceae

Prevotella

  97 (0.8%)

10

5

Clostridiales

Ruminococcaceae

Faecalibacterium

  87 (0.7%)

0

1

Proteobacteria

Burkholderiaceae

Sutterella

  86 (0.7%)

9

0

Bacteroidetes

Tannerellaceae

Parabacteroides

  74 (0.6%)

2

0

Fusobacteria

Fusobacteriaceae

Fusobacterium

  72 (0.6%)

17

0

Firmicutes

Ruminococcaceae

Subdoligranulum

  54 (0.4%)

4

0

Firmicutes

Ruminococcaceae

Oscillospira

  86 (0.7%)

9

0

Bacteroidetes

Tannerellaceae

Parabacteroides

  15 (0.1%)

0

6

Erysipelotrichales

Erysipelotrichaceae

Erysipelotrichaceae_UCG-004

Genera missing in unit 1 but observed in other units

  0

31

1581

Bacteroidales

Prevotellaceae

Prevotellaceae_UCG-004

  0

1

1196

Bacteroidales

p-2534-18B5_gut_group

Unassigned, annotated as

[f]p-2534-18B5_gut_group

  0

16

905

Bacteroidales

Rikenellaceae

dgA-11_gut_group

  0

2

401

Clostridiales

Ruminococcaceae

Caproiciproducens