Table 2 Prediction of virulence factors and protein secretion systems in the 14 hypothetical and the AspC proteins of the symbiosis island of Bradyrhizobium japonicum strain SEMIA 5079 (= CPAC 15) annotated in this study
Protein ID | VICMpred | VirulentPred | EffectiveDB | |||
|---|---|---|---|---|---|---|
EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | |||
BJS_07536 | Information and storage | Non-Virulent | - | - | - | - |
BJS_07605 | Cellular process | Non-Virulent | - | - | - | PF08267/PF01717 |
BJS_07621 | Cellular process | Non-Virulent | 1 (high confidence) | - | - | PF04828 |
BJS_07647 | Metabolism Molecule | Non-Virulent | - | - | - | - |
BJS_08160 | Metabolism Molecule | Non-Virulent | - | - | - | PF02735 |
BJS_08216 | Metabolism Molecule | Non-Virulent | - | - | - | - |
BJS_08240 | Virulence factors | Non-Virulent | - | - | - | - |
BJS_08251 | Cellular process | Non-Virulent | - | - | - | PF13365 |
BJS_08254 | Cellular process | Virulent | 1 (high confidence) | - | - | PF13365 |
BJS_08258 (AspC) | Metabolism Molecule | Non-Virulent | 1 (high confidence) | - | - | PF00155 |
BJS_08261 | Metabolism Molecule | Non-Virulent | - | - | - | PF00171 |
BJS_08267 | Metabolism Molecule | Non-Virulent | - | - | - | PF07690 |
BJS_08317 | Information and storage | Non-Virulent | - | - | - | - |
BJS_08523 | Cellular process | Non-Virulent | - | - | - | - |
BJS_08774 | Cellular process | Virulent | - | - | - | - |