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Table 1 Hypothetical proteins of the symbiosis island of Bradyrhizobium japonicum strain SEMIA 5079 (= CPAC 15) annotated in this study

From: Revealing potential functions of hypothetical proteins induced by genistein in the symbiosis island of Bradyrhizobium japonicum commercial strain SEMIA 5079 (= CPAC 15)

Protein ID

Protein

Subcellular localization

SOSUIa

Signal Pepb

Molecular Function

Biological Process

BJS_07536

Squalene-hopene cyclase

Cytoplasmic

S

NSP

cyclizes squalene into hopanoid products

hopanoid (triterpenoid) metabolism

BJS_07605

5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase

Cytoplasmic

S

NSP

methyltransferase; zinc ion binding

methionine biosynthesis

BJS_07621

Glutathione-dependent formaldehyde-activating (GFA) enzyme

Cytoplasmic

S

NSP

carbon-sulfur lyase activity

metabolic process

BJS_07647

Porin protein

Outer Membrane

1 TMH

SP

non-specific channels for small hydrophilic molecules

molecules transport

BJS_08160

Non-homologous end joining protein Ku

Cytoplasmic

S

NSP

DNA binding

DNA recombination

BJS_08216

Hydrogenase maturation factor HypA

Cytoplasmic

S

NSP

nickel cation binding

cellular protein modification process

BJS_08240

Peptidase U49

Cytoplasmic

1 TMH

NSP

peptidase cleaves domain I of the elongation factor

catalytic mechanism

BJS_08251

Trypsin-like peptidase

Cytoplasmic

S

NSP

serine-type endopeptidase activity

proteolysis

BJS_08254

Trypsin-like peptidase

Extracellular

S

SP

serine-type endopeptidase activity

proteolysis

BJS_08258

( aspC )

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme

Cytoplasmic

S

NSP

pyridoxal phosphate binding

biosynthetic process

BJS_08261

Succinate-semialdehyde dehydrogenase

Cytoplasmic

S

NSP

succinate-semialdehyde dehydrogenase

oxidation-reduction process

BJS_08267

Major Facilitator transporter

Inner Membrane

11 TMH

NSP

transmembrane transporter activity

molecules transport

BJS_08317

HxlR-type HTH transcription regulator

Cytoplasmic

S

NSP

transcription regulator

amino acid biosynthesis

BJS_08523

7-cyano-7-deazaguanine synthase

Cytoplasmic

1 TMH

NSP

ATP-dependent conversion of 7-carboxy-7-deazaguanine to 7-cyano-7-deazaguanine

queuosine biosynthetic process

BJS_08774

Acetylcholinesterase

Cytoplasmic

1 TMH

NSP

acetylcholinesterase tetramerization

glycerophospholipid metabolism

  1. a Prediction of soluble protein (S) or transmembrane helices structures (TMH); b Prediction of peptide signal, secreted protein (SP) or no-secreted protein (NSP)