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Table 2 Relative abundance data of species detected by 16S rRNA gene amplicon sequencing

From: High-throughput qPCR and 16S rRNA gene amplicon sequencing as complementary methods for the investigation of the cheese microbiota

 

Shared species

Other species

L. pentosus

L. sunkii

 

[%]

[n]

[%]

[n]

[%]

[%]

S01

98.73

13

0.03

3

1.24

0.01

S02

95.06

12

0.09

6

4.83

0.02

S03

91.16

14

0.36

6

8.47

 

S04

44.69

14

0.44

11

36.27

18.6

S05

90.24

13

0.07

4

6.33

3.36

S06

98.62

12

0.01

5

1.37

 

S07

92.47

12

0.01

1

7.52

 

S08

99.93

10

0.02

3

0.05

 

S09

98.89

12

0.11

3

1.00

 

S10

99.91

7

0.09

1

  

S11

94.59

15

0.05

3

5.36

 

S12

99.31

13

0.09

5

0.33

0.27

S13

94.06

12

0.14

4

5.81

 

S14

94.76

13

0.23

5

5.01

 

S15

99.26

10

0.03

5

0.71

 

S16

98.11

11

0.02

4

1.86

 

S17

89.88

11

0.04

2

10.08

 

S18

99.5

11

0.18

3

0.31

 

S19

95.44

14

0.13

6

4.43

 

S20

98.24

10

0.63

5

1.12

0.01

S21

97.85

13

0.03

7

2.11

 
  1. Percentage of reads assigned to species also covered by HT-qPCR (shared) and other species that were not covered by HT-qPCR. The two species, Lactiplantibacillus pentosus and Lentilactobacillus sunkii, with the largest overall abundance are shown separately