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Table 2 Analysis of sequenced data of the amplicon metagenomes of the sunflower soil samples

From: Comparative study of microbial structure and functional profile of sunflower rhizosphere grown in two fields

Sampling site SHR SHB ITR ITB
Uploading Information
bp count 36,938,758 25,321,399 27,104,520 26,066,428
Sequences count 125,264.5 86,929.5 91,939.5 88,384.5
Mean sequence length (bp) 295 ± 5.0 289.5 ± 29.0 295 ± 5.0 295 ± 5.0
Mean GC count (%) 55 ± 3.0 53.5 ± 3.0 56.5 ± 3.0 57 ± 3.0
Post QC Information
bp count 4,181,225 2,912,336.5 4,260,016 4,645,809
Sequences count 14,556 10,364 14,637.5 15,941
Mean sequence length (bp) 287.5 ± 24.0 279 ± 40.0 291 ± 9.0 291 ± 10.0
Mean GC count (%) 56 ± 4.0 54.5 ± 4.0 56.5 ± 4.0 57 ± 4.0
Processed Sequences
Predicted proteins features 155.5 193.0 254.5 344.0
Predicted rRNA features 22,730 13,358.5 22,051 25,648
Aligned Sequences
Identified protein features 60 60.5 98.5 125.5
Identified rRNA features 19,312.5 11,693.5 18,265 20,065
  1. Legend: SHR Sheila rhizosphere soil, SHB Sheila bulk soil, ITR Itsoseng rhizosphere soil, ITB Itsoseng bulk soil, GC Guanine cytosine content, bp-base pair,, data represent the mean of the original samples