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Fig. 3 | BMC Microbiology

Fig. 3

From: Metaproteomics reveals insights into microbial structure, interactions, and dynamic regulation in defined communities as they respond to environmental disturbance

Fig. 3

Metaproteomics analysis of Pseudomonas sp. GM17 functional behavior during community assembly. (A) Overlap of proteins identified between both media. Each node represents a unique protein accession, and the color indicates whether the relative protein abundance changed significantly based on ANOVA in one (yellow) or both media (red) or not significant in either (grey). Figure generated using DiVenn 2.0. (B) Relative protein abundance for the GacS sensor histidine kinase and the GacA response regulator in MOPS (black) or R2A media (red). Error bars represent standard error for each set of biological triplicates. (C) Heatmap (one-way clustering using ward method) illustration for 18 antibiotic and secondary metabolite gene clusters predicted by antiSMASH v5.0. Color gradient represents the percentage of proteins identified for a given gene cluster. (D). Heatmap (one-way clustering using ward method) illustration of relative protein abundances for proteins encoded by the 18 antibiotic and secondary metabolite gene clusters. Color gradient represents a standardized score calculated per protein and white represents proteins that were not quantified in a particular medium

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BMC Microbiology

ISSN: 1471-2180

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