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Table 1 The key parameters of the 15 metabolic models used in this study

From: Global connectivity in genome-scale metabolic networks revealed by comprehensive FBA-based pathway analysis

Model_ID Organism Domain1 Metabolites Reactions Genes
iHN637 [29] Clostridium ljungdahlii DSM 13,528 p 698 785 637
iML1515 [21] Escherichia coli str. K-12 substr. MG1655 p 1877 2712 1516
iAF987 [30] Geobacter metallireducens GS-15 p 1109 1285 987
iYL1228 [31] Klebsiella pneumoniae subsp. pneumoniae MGH 78,578 p 1658 2262 1229
iAF692 [32] Methanosarcina barkeri str. Fusaro p 628 690 692
iAM_Pb448 [33] Plasmodium berghei e 903 1067 448
iAM_Pc455 [33] Plasmodium cynomolgi strain B e 907 1074 455
iAM_Pf480 [33] Plasmodium falciparum 3D7 e 909 1083 480
iAM_Pk459 [33] Plasmodium knowlesi strain H e 909 1079 459
iJN1463 [34] Pseudomonas putida KT2440 p 2153 2927 1462
iSbBS512_1146 [35] Shigella boydii CDC 3083-94 p 1910 2591 1147
iSDY_1059 [35] Shigella dysenteriae Sd197 p 1888 2539 1059
iSF_1195 [35] Shigella flexneri 2a str. 301 p 1917 2630 1195
iSSON_1240 [35] Shigella sonnei Ss046 p 1936 2693 1240
iPC815 [36] Yersinia pestis CO92 p 1552 1961 815
  1. Notes: 1. p: prokaryote; e: eukaryote