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Table 2 Genera uniquely detected by culturomics, metagenomics, and overlap

From: Cultivation of common bacterial species and strains from human skin, oral, and gut microbiota

Phylum Genus # samples cultured only # samples metagenomic only # overlaps # total samples
Actinobacteria Corynebacterium 5 2 12 19
Firmicutes Streptococcus 1 7 11 19
Firmicutes Veillonella 0 7 10 17
Proteobacteria Neisseria 0 4 10 14
Actinobacteria Actinomyces 2 3 10 15
Actinobacteria Rothia 0 6 9 15
Firmicutes Staphylococcus 8 0 9 17
Actinobacteria Cutibacterium 1 3 8 12
Proteobacteria Haemophilus 0 9 7 16
Firmicutes Gemella 0 7 6 13
Firmicutes Lachnoanaerobaculum 0 5 5 10
Bacteroidetes Bacteroides 0 1 5 6
Bacteroidetes Parabacteroides 0 0 5 5
Fusobacteria Fusobacterium 1 3 4 8
Firmicutes Lactobacillus 2 2 3 7
Actinobacteria Bifidobacterium 0 1 3 4
Actinobacteria Collinsella 0 0 3 3
Bacteroidetes Prevotella 0 12 2 14
Proteobacteria Aggregatibacter 0 6 2 8
Firmicutes Clostridium 3 4 2 9
Actinobacteria Micrococcus 2 2 2 6
Proteobacteria Escherichia 3 1 2 6
Actinobacteria Brevibacterium 1 1 2 4
Firmicutes Flavonifractor 2 0 2 4
Firmicutes Granulicatella 0 13 1 14
Actinobacteria Atopobium 1 5 1 7
Actinobacteria Kocuria 1 5 1 7
Firmicutes Eubacterium 1 3 1 5
Proteobacteria Acinetobacter 0 3 1 4
Bacteroidetes Alistipes 0 3 1 4
Firmicutes Blautia 1 2 1 4
Bacteroidetes Odoribacter 1 2 1 4
Actinobacteria Kytococcus 1 1 1 3
Firmicutes Bacillus 5 0 1 6
Actinobacteria Dermabacter 2 0 1 3
Bacteroidetes Capnocytophaga 0 9 0 9
Proteobacteria Actinobacillus 0 8 0 8
Fusobacteria Leptotrichia 0 7 0 7
Bacteroidetes Porphyromonas 0 7 0 7
Bacteroidetes Alloprevotella 0 7 0 7
Firmicutes Oribacterium 0 6 0 6
Firmicutes Stomatobaculum 0 6 0 6
Firmicutes Subdoligranulum 0 6 0 6
Proteobacteria Campylobacter 2 5 0 7
Firmicutes Peptostreptococcus 2 5 0 7
Firmicutes Megasphaera 0 5 0 5
Firmicutes Solobacterium 0 5 0 5
Firmicutes Oscillibacter 0 5 0 5
Proteobacteria Enhydrobacter 0 4 0 4
Firmicutes Abiotrophia 0 4 0 4
Proteobacteria Kingella 0 4 0 4
Firmicutes Dorea 0 4 0 4
Proteobacteria Bilophila 0 4 0 4
Firmicutes Faecalibacterium 0 4 0 4
Firmicutes Finegoldia 2 3 0 5
Firmicutes Selenomonas 0 3 0 3
Saccharibacteria Saccharibacteria 0 3 0 3
Proteobacteria Parasutterella 0 3 0 3
Firmicutes Roseburia 0 3 0 3
Firmicutes Anaerococcus 3 2 0 5
Firmicutes Ruminococcus 2 2 0 4
Firmicutes Parvimonas 1 2 0 3
Actinobacteria Eggerthella 3 1 0 4
Firmicutes Pediococcus 2 1 0 3
Firmicutes Enterococcus 6 0 0 6
Proteobacteria Citrobacter 3 0 0 3
Actinobacteria Dietzia 3 0 0 3
Firmicutes Lysinibacillus 3 0 0 3