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Table 2 Genera uniquely detected by culturomics, metagenomics, and overlap

From: Cultivation of common bacterial species and strains from human skin, oral, and gut microbiota

Phylum

Genus

# samples cultured only

# samples metagenomic only

# overlaps

# total samples

Actinobacteria

Corynebacterium

5

2

12

19

Firmicutes

Streptococcus

1

7

11

19

Firmicutes

Veillonella

0

7

10

17

Proteobacteria

Neisseria

0

4

10

14

Actinobacteria

Actinomyces

2

3

10

15

Actinobacteria

Rothia

0

6

9

15

Firmicutes

Staphylococcus

8

0

9

17

Actinobacteria

Cutibacterium

1

3

8

12

Proteobacteria

Haemophilus

0

9

7

16

Firmicutes

Gemella

0

7

6

13

Firmicutes

Lachnoanaerobaculum

0

5

5

10

Bacteroidetes

Bacteroides

0

1

5

6

Bacteroidetes

Parabacteroides

0

0

5

5

Fusobacteria

Fusobacterium

1

3

4

8

Firmicutes

Lactobacillus

2

2

3

7

Actinobacteria

Bifidobacterium

0

1

3

4

Actinobacteria

Collinsella

0

0

3

3

Bacteroidetes

Prevotella

0

12

2

14

Proteobacteria

Aggregatibacter

0

6

2

8

Firmicutes

Clostridium

3

4

2

9

Actinobacteria

Micrococcus

2

2

2

6

Proteobacteria

Escherichia

3

1

2

6

Actinobacteria

Brevibacterium

1

1

2

4

Firmicutes

Flavonifractor

2

0

2

4

Firmicutes

Granulicatella

0

13

1

14

Actinobacteria

Atopobium

1

5

1

7

Actinobacteria

Kocuria

1

5

1

7

Firmicutes

Eubacterium

1

3

1

5

Proteobacteria

Acinetobacter

0

3

1

4

Bacteroidetes

Alistipes

0

3

1

4

Firmicutes

Blautia

1

2

1

4

Bacteroidetes

Odoribacter

1

2

1

4

Actinobacteria

Kytococcus

1

1

1

3

Firmicutes

Bacillus

5

0

1

6

Actinobacteria

Dermabacter

2

0

1

3

Bacteroidetes

Capnocytophaga

0

9

0

9

Proteobacteria

Actinobacillus

0

8

0

8

Fusobacteria

Leptotrichia

0

7

0

7

Bacteroidetes

Porphyromonas

0

7

0

7

Bacteroidetes

Alloprevotella

0

7

0

7

Firmicutes

Oribacterium

0

6

0

6

Firmicutes

Stomatobaculum

0

6

0

6

Firmicutes

Subdoligranulum

0

6

0

6

Proteobacteria

Campylobacter

2

5

0

7

Firmicutes

Peptostreptococcus

2

5

0

7

Firmicutes

Megasphaera

0

5

0

5

Firmicutes

Solobacterium

0

5

0

5

Firmicutes

Oscillibacter

0

5

0

5

Proteobacteria

Enhydrobacter

0

4

0

4

Firmicutes

Abiotrophia

0

4

0

4

Proteobacteria

Kingella

0

4

0

4

Firmicutes

Dorea

0

4

0

4

Proteobacteria

Bilophila

0

4

0

4

Firmicutes

Faecalibacterium

0

4

0

4

Firmicutes

Finegoldia

2

3

0

5

Firmicutes

Selenomonas

0

3

0

3

Saccharibacteria

Saccharibacteria

0

3

0

3

Proteobacteria

Parasutterella

0

3

0

3

Firmicutes

Roseburia

0

3

0

3

Firmicutes

Anaerococcus

3

2

0

5

Firmicutes

Ruminococcus

2

2

0

4

Firmicutes

Parvimonas

1

2

0

3

Actinobacteria

Eggerthella

3

1

0

4

Firmicutes

Pediococcus

2

1

0

3

Firmicutes

Enterococcus

6

0

0

6

Proteobacteria

Citrobacter

3

0

0

3

Actinobacteria

Dietzia

3

0

0

3

Firmicutes

Lysinibacillus

3

0

0

3