Gene ID | Location | Description | FC α | RT-PCR |
---|---|---|---|---|
Symbiotic nitrogen Fixation and nitrogen mechanism | ||||
MCHK_RS32450 | pMHb | electron transfer flavoprotein FixA | −8.38 | − 9.98 |
MCHK_RS32495 | pMHb | nitrogen fixation protein NifZ | −8.37 | |
MCHK_RS32500 | pMHb | nitrogen fixation protein NifT | −8.64 | |
MCHK_RS32360 | pMHb | nitrogen fixation protein NifQ | −7.12 | |
MCHK_RS31365 | pMHa | Nif11-like leader peptide family natural product precursor | −6.00 | |
MCHK_RS31560 | pMHa | Nif11 family protein | −4.35 | |
MCHK_RS32300 | pMHb | nitrogen fixation protein NifX | −4.30 | |
MCHK_RS32485 | pMHb | nitrogenase cofactor biosynthesis protein NifB | −4.53 | |
MCHK_RS32590 | pMHb | alanine racemase | −4.28 | |
MCHK_RS32615 | pMHb | aminotransferase | −4.82 | |
MCHK_RS34850 | pMHb | pilus assembly lipoprotein | −3.11 | |
MCHK_RS31565 | pMHa | amino acid epimerase | −4.46 | |
MCHK_RS31130 | pMHa | N-acetyltransferase | −3.22 | |
MCHK_RS08325 | Chro | ABC transporter permease | −4.28 | |
MCHK_RS11590 | Chro | urea ABC transporter substrate-binding protein | −3.40 | |
MCHK_RS34620 | pMHa | ABC transporter permease | −3.24 | |
MCHK_RS08320 | Chro | ABC transporter permease | −3.16 | |
MCHK_RS08335 | Chro | ABC transporter ATP-binding protein | −5.74 | |
MCHK_RS08330 | Chro | ABC transporter substrate-binding protein | −5.15 | |
MCHK_RS07300 | Chro | ABC transporter substrate-binding protein | −3.12 | |
MCHK_RS11580 | Chro | urea ABC transporter permease subunit UrtC | −3.11 | |
Type VI secretion system | ||||
MCHK_RS31520 | pMHa | type VI secretion system baseplate subunit TssG | −6.17 | |
MCHK_RS31510 | pMHa | type VI secretion system baseplate subunit TssE | −6.12 | |
MCHK_RS31500 | pMHa | type VI secretion system contractile sheath large subunit | −6.08 | |
MCHK_RS31530 | pMHa | type VI secretion system tip protein VgrG | −6.78 | |
MCHK_RS31415 | pMHa | type VI secretion system baseplate subunit TssK | −5.84 | |
MCHK_RS31515 | pMHa | type VI secretion system baseplate subunit TssF | −7.52 | |
MCHK_RS31420 | pMHa | type VI secretion system-associated FHA domain protein TagH | −5.17 | |
MCHK_RS31490 | pMHa | type VI secretion system protein TssA | −4.94 | |
MCHK_RS31495 | pMHa | type VI secretion system contractile sheath small subunit | −3.14 | |
MCHK_RS31505 | pMHa | type VI secretion system tube protein Hcp | −6.97 | |
MCHK_RS31430 | pMHa | type VI secretion system membrane subunit TssM | −6.87 | |
MCHK_RS31425 | pMHa | type IV/VI secretion system protein | −5.73 | |
Electron transport and antioxidant system | ||||
MCHK_RS34955 | pMHa | ferredoxin | −5.68 | |
MCHK_RS32340 | pMHb | cytochrome P450 | −10.19 | |
MCHK_RS32465 | pMHb | ferredoxin family protein | −8.26 | −9.60 |
MCHK_RS32535 | pMHb | cytochrome P450 | −5.40 | |
MCHK_RS32600 | pMHb | 4Fe4S-binding protein | −3.77 | |
MCHK_RS31355 | pMHa | peroxiredoxin | −8.09 | |
MCHK_RS31120 | pMHa | FAD-dependent oxidoreductase | −3.91 | |
MCHK_RS32355 | pMHb | flavin-dependent oxidoreductase | −8.59 | |
MCHK_RS34760 | pMHa | cold-shock protein | −6.69 | |
MCHK_RS32350 | pMHb | short-chain dehydrogenase | −8.59 | |
MCHK_RS34755 | pMHa | cysteine protease avirulence protein AvrRpt2 | −9.06 | |
MCHK_RS31555 | pMHa | L-ascorbate oxidase | −9.55 | −13.04 |
MCHK_RS08620 | Chro | FAD-binding oxidoreductase | −3.14 | |
MCHK_RS32460 | pMHb | FAD-dependent oxidoreductase | −6.41 | |
MCHK_RS32390 | pMHb | cold-shock protein | −6.31 | |
MCHK_RS31275 | pMHa | NADPH-dependent F420 reductase | −7.42 | |
Nucleic acid metabolism | ||||
MCHK_RS31350 | pMHa | recombinase family protein | −3.09 | |
MCHK_RS31480 | pMHa | DNA-binding response regulator | −4.52 | |
MCHK_RS32415 | pMHb | integrase | −4.71 | |
MCHK_RS31865 | pMHb | transposase | −4.70 | |
MCHK_RS34785 | pMHa | IS110 family transposase | −7.61 | |
MCHK_RS31270 | pMHa | IS6 family transposase | −7.60 | |
MCHK_RS31860 | pMHb | IS6 family transposase | −4.07 | |
MCHK_RS33710 | Chro | IS6 family transposase | −3.65 | |
MCHK_RS34835 | pMHa | IS6 family transposase | −3.60 | |
MCHK_RS32210 | pMHb | IS6 family transposase | −4.68 | |
MCHK_RS34745 | pMHa | IS6 family transposase | −4.63 | |
MCHK_RS31375 | pMHa | IS6 family transposase | −3.26 | |
MCHK_RS31385 | pMHa | IS21 family transposase | −6.61 | |
MCHK_RS05160 | Chro | translocated repetitive protein | −8.36 | |
MCHK_RS31125 | pMHa | maturation protein 1 | −3.03 | |
MCHK_RS32635 | pMHb | autoinducer synthase | −5.04 | |
MCHK_RS31360 | pMHa | RNA polymerase sigma-54 factor | −7.22 | |
MCHK_RS31390 | pMHa | GntR family transcriptional regulator | −6.74 | |
MCHK_RS32640 | pMHb | LuxR family transcriptional regulator | −6.49 | |
MCHK_RS31250 | pMHa | XRE family transcriptional regulator | −5.93 | |
MCHK_RS34740 | pMHa | hypothetical protein(transcriptional regulator) | −7.35 | |
MCHK_RS32365 | pMHb | RNA polymerase sigma-54 factor | −5.62 | |
MCHK_RS34845 | pMHa | DNA-binding response regulator | −3.47 | |
MCHK_RS31380 | pMHa | nuclear transport factor 2 family protein | −8.90 | |
MCHK_RS32345 | pMHb | nuclear transport factor 2 family protein | −8.59 | − 8.83 |
MCHK_RS34720 | pMHa | DDE-type integrase/transposase/recombinas | −6.91 | |
MCHK_RS31330 | pMHa | (Nucleotidyl transferase proteins) NTP transferase | −9.47 | −4.57 |
Carbon mechanism | ||||
MCHK_RS17040 | Chro | formyl transferase | −4.39 | |
MCHK_RS17020 | Chro | glycosyltransferase | −4.37 | |
MCHK_RS00340 | Chro | acyltransferase | −3.88 | |
MCHK_RS08380 | Chro | acyltransferase | −3.19 | |
MCHK_RS31550 | pMHa | tyrosinase | −8.35 | |
MCHK_RS32545 | pMHb | metalloenzyme | −3.22 | |
MCHK_RS17025 | Chro | glycosyl hydrolase | −3.70 | |
MCHK_RS32620 | pMHb | alkaline phosphatase | −4.31 | |
MCHK_RS32605 | pMHb | transketolase | −3.46 | |
MCHK_RS31340 | pMHa | EamA family transporter | −9.09 | −6.79 |
MCHK_RS31315 | pMHa | EamA family transporter | −5.96 | |
Hypothetical protein | ||||
MCHK_RS34775 | pMHa | hypothetical protein | −9.07 | |
MCHK_RS32295 | pMHb | hypothetical protein | −9.03 | |
MCHK_RS33605 | pMHb | hypothetical protein | −7.97 | |
MCHK_RS31545 | pMHa | hypothetical protein | −7.62 | |
MCHK_RS31320 | pMHa | hypothetical protein | −9.16 | |
MCHK_RS34780 | pMHa | hypothetical protein | −6.56 | |
MCHK_RS09340 | Chro | hypothetical protein | −6.25 | |
MCHK_RS32420 | pMHb | hypothetical protein | −6.18 | |
MCHK_RS33530 | Chro | hypothetical protein | −5.37 | |
MCHK_RS32630 | pMHb | hypothetical protein | −5.22 | |
MCHK_RS32550 | pMHb | hypothetical protein | −5.03 | |
MCHK_RS34750 | pMHa | hypothetical protein | −4.98 | |
MCHK_RS32395 | pMHb | hypothetical protein | −4.90 | |
MCHK_RS31405 | pMHa | hypothetical protein | −4.55 | |
MCHK_RS31285 | pMHa | hypothetical protein | −4.16 | |
MCHK_RS31535 | pMHa | hypothetical protein | −4.12 | |
MCHK_RS34940 | pMHb | hypothetical protein | −3.79 | |
MCHK_RS32575 | pMHb | hypothetical protein | −3.59 | |
MCHK_RS09315 | Chro | hypothetical protein | −3.52 | |
MCHK_RS31115 | pMHa | hypothetical protein | −4.39 | |
MCHK_RS32680 | pMHb | hypothetical protein | −3.38 | |
MCHK_RS32585 | pMHb | hypothetical protein | −4.70 | |
MCHK_RS32595 | pMHb | hypothetical protein | −4.96 | |
MCHK_RS31435 | pMHa | hypothetical protein | −6.69 |