Table 3 Antimicrobial resistance genes detected in 104 whole-genome sequences of A. baumannii originating from Germany and deposited in NCBI

1

aph(3′)-VI

PHT

7

6.7

Amikacin, Kanamycin

NG_051730.1

2

aph(3′)-VIa

PHT

24

23

NG_047448.1

3

aph(3′)-VIb

PHT

2

1.9

NG_047449.1

4

aac(6′)-Ib

ACT

3

2.9

Aminoglycoside

NG_051695.1

5

aacA16

ACT

6

5.7

NG_052380.1

6

aac(3)-I

ACT

22

21

Gentamicin

NG_047234.1

7

aac(3)-IId

ACT

1

0.96

NG_047251.1

8

armA

MET

22

21

NG_052432.1

9

ant(2″)-Ia

NUT

13

12.5

Gentamicin; Kanamycin; Tobramycin

NG_047431.1

10

aph(3′)-Ia

PHT

28

27

Kanamycin

NG_052432.1

11

aadA1

NUT

22

21

Streptomycin

NG_047327.1

12

aadA2

NUT

1

0.96

NG_051846.1

13

aadA5

NUT

1

0.96

NG_047357.1

14

aph(3″)-Ib

PHT

48

46

NG_047413.1

15

aph(6)-Id

PHT

45

43

NG_047464.1

16

ant(3″)-IIa

PHT

104

100

Streptomycin; Spectinomycin

NG_054646.1

17

blaCARB-16

CARB-5

1

0.96

Beta-Lactam

NG_048718.1

18

blaNmca

Class A

1

0.96

NG_055474.1

19

blaOXA-699

Single

1

0.96

NG_062321.1

20

blaOXA-735

Single

1

0.96

NG_062267.1

21

blaTEM-1

TEM

1

0.96

NG_050145.1

22

ble-MBL

BRP

3

2.9

Bleomycin

NG_047559.1

23

blaNDM-1

NDM

3

2.9

Carbapenem

NG_049326.1

24

blaOXA-100

OXA-51

6

5.7

NG_049394.1

25

blaOXA-104

1

0.96

NG_049397.1

26

blaOXA-126

1

0.96

NG_049425.1

27

blaOXA-208

4

3.8

NG_049506.1

28

blaOXA-314

1

0.96

NG_049608.1

29

blaOXA-317

1

0.96

NG_049611.1

30

blaOXA-365

1

0.96

NG_049658.1

31

blaOXA-374

2

1.9

NG_049665.1

32

blaOXA-378

2

1.9

NG_049669.1

33

blaOXA-430

3

2.9

NG_049717.1

34

blaOXA-51

1

0.96

NG_049788.1

35

blaOXA-64

12

11.5

NG_049804.1

36

blaOXA-66

40

38.5

NG_049806.1

37

blaOXA-68

5

4.8

NG_049808.1

38

blaOXA-69

11

10.6

NG_049809.1

39

blaOXA-88

1

0.96

NG_049828.1

40

blaOXA-90

2

1.9

NG_049831.1

41

blaOXA-94

3

2.9

NG_049835.1

42

blaOXA-98

1

0.96

NG_049839.1

43

blaOXA-23

OXA-23

43

41

NG_049525.1

44

blaOXA-164

OXA-58

3

2.9

NG_049463.1

45

blaOXA-72

OXA-40

10

9.6

NG_049813.1

46

blaOXA-558

Single

4

3.8

NG_054702.1

47

catA1

catA

9

8.6

Chloramphenicol

NG_047582.1

48

catB8

catB3

2

1.9

NG_047616.1

49

cmlA1

cmlA1

1

0.96

NG_047647.1

50

cmlA5

cmlA1

1

0.96

NG_051436.1

51

cmlB1

cmlB1

6

5.8

NG_047658.1

52

floR

type E-3

3

2.8

Chloramphenicol; Florfenicol

NG_047869.1

53

blaADC-101

ADC

2

1.9

Cephalosporin

NG_051440.1

54

blaADC-11

3

2.9

NG_048635.1

55

blaADC-117

1

0.96

NG_064676.1

56

blaADC-120

3

2.9

NG_064678.1

57

blaADC-154

1

0.96

NG_054996.1

58

blaADC-155

2

1.9

NG_055285.1

59

blaADC-156

1

0.96

NG_055286.1

60

blaADC-158

1

0.96

NG_055786.1

61

blaADC-160

1

0.96

NG_055788.1

62

blaADC-163

1

0.96

NG_056105.1

63

blaADC-165

1

0.96

NG_056107.1

64

blaADC-166

8

7.7

NG_056108.1

65

blaADC-167

1

0.96

NG_056109.1

66

blaADC-179

1

0.96

NG_061395.1

67

blaADC-184

1

0.96

NG_064707.1

68

blaADC-185

1

0.96

NG_064708.1

69

blaADC-186

3

2.9

NG_064709.1

70

blaADC-192

1

0.96

NG_064715.1

71

blaADC-25

2

1.9

NG_048649.1

72

blaADC-26

6

5.8

NG_048650.1

73

blaADC-30

15

14.4

NG_048652.1

74

blaADC-32

2

1.9

NG_050717.1

75

blaADC-57

4

3.8

NG_051494.1

76

blaADC-6

1

0.96

NG_048669.1

77

blaADC-73

19

18

NG_048678.1

78

blaADC-74

4

3.8

NG_048679.1

79

blaADC-76

5

4.8

NG_048681.1

80

blaADC-79

7

6.7

NG_048684.1

81

blaADC-80

1

0.96

NG_048686.1

82

blaADC-95

1

0.96

NG_051459.1

83

blaADC-96

1

0.96

NG_051460.1

84

blaCMY-30

CMY

1

0.96

NG_048825.1

85

blaCTX-M⁻¹⁵

CTX-M⁻¹⁵

1

0.96

NG_048935.1

86

blaGES-11

GES

1

0.96

NG_049113.1

87

blaPER-1

PER

2

1.9

NG_049960.1

88

blaPER-10

1

0.95

NG_059319.1

89

blaTEM-12

TEM

19

18

NG_050163.1

90

mph(E)

mph(E)

34

32.7

Macrolide

NG_064660.1

91

msr(E)

msr(E)

33

31.7

NG_048007.1

92

arr-2

1

0.96

Rifamycin

NG_048580.1

93

sat2_gen

4

3.8

Streptothricin

NG_048068.1

94

sul1

22

21

Sulfonamide

NG_048082.1

95

sul2

47

45

NG_051852.1

96

Tet.39

tet efflux

7

6.7

Tetracycline

NG_048137.1

97

Tet.A

6

5.8

NG_048154.1

98

Tet.B

38

36.5

NG_048163.1

99

dfrA1

dfrA

4

3.8

Trimethoprim

NG_047676.1

100

dfrA17

1

0.96

NG_047710.1

101

dfrA7

1

0.96

NG_047737.1