From: Genome analysis to decipher syntrophy in the bacterial consortium ‘SCP’ for azo dye degradation
COG Categories | Gene number assigned to isolates | ||
---|---|---|---|
APG1 | APG2 | APG4 | |
Information Storage and Processing | |||
Transcription (K) | 200 | 245 | 282 |
Translation, ribosomal structure and biogenesis (J) | 186 | 194 | 160 |
Replication, recombination and repair (L) | 182 | 222 | 187 |
RNA processing and modification (A) | 1 | 1 | 0 |
Total | 569 (17.5%) | 662 (16.5%) | 629 (20.8%) |
Cellular Processes and Signaling | |||
Cell wall/membrane/envelope biogenesis (M) | 237 | 219 | 143 |
Signal transduction mechanisms (T) | 134 | 188 | 144 |
Posttranslational modification, protein turnover, chaperones (O) | 113 | 131 | 101 |
Defense mechanisms (V) | 97 | 43 | 83 |
Intracellular trafficking, secretion, and vesicular transport (U) | 57 | 101 | 27 |
Cell cycle control, cell division, chromosome partitioning (D) | 46 | 54 | 38 |
Cell motility (N) | 40 | 46 | 27 |
Total | 724 (22.3%) | 782 (19.5%) | 563 (18.6%) |
Metabolism | |||
Amino acid transport and metabolism (E) | 207 | 255 | 193 |
Inorganic ion transport and metabolism (P) | 174 | 247 | 155 |
Energy production and conversion (C) | 146 | 260 | 171 |
Coenzyme transport and metabolism (H) | 102 | 144 | 89 |
Carbohydrate transport and metabolism (G) | 97 | 130 | 235 |
Lipid transport and metabolism (I) | 90 | 120 | 71 |
Nucleotide transport and metabolism (F) | 75 | 104 | 71 |
Secondary metabolites biosynthesis, transport & catabolism (Q) | 46 | 72 | 33 |
Total | 937 (28.9%) | 1332 (33.2%) | 1018 (33.6%) |
Poorly Characterized | |||
Function unknown (S) | 745 | 919 | 600 |
Total | 745 (22.9%) | 919 (22.9%) | 600 (19.8%) |
Total no. of genes | 2975 | 3695 | 2810 |