Skip to main content

Table 3 Functional classification of genes to COG categories from the draft genome of APG isolates

From: Genome analysis to decipher syntrophy in the bacterial consortium ‘SCP’ for azo dye degradation

COG Categories

Gene number assigned to isolates

APG1

APG2

APG4

Information Storage and Processing

 Transcription (K)

200

245

282

 Translation, ribosomal structure and biogenesis (J)

186

194

160

 Replication, recombination and repair (L)

182

222

187

 RNA processing and modification (A)

1

1

0

 Total

569 (17.5%)

662 (16.5%)

629 (20.8%)

Cellular Processes and Signaling

 Cell wall/membrane/envelope biogenesis (M)

237

219

143

 Signal transduction mechanisms (T)

134

188

144

 Posttranslational modification, protein turnover, chaperones (O)

113

131

101

 Defense mechanisms (V)

97

43

83

 Intracellular trafficking, secretion, and vesicular transport (U)

57

101

27

 Cell cycle control, cell division, chromosome partitioning (D)

46

54

38

 Cell motility (N)

40

46

27

 Total

724 (22.3%)

782 (19.5%)

563 (18.6%)

Metabolism

 Amino acid transport and metabolism (E)

207

255

193

 Inorganic ion transport and metabolism (P)

174

247

155

 Energy production and conversion (C)

146

260

171

 Coenzyme transport and metabolism (H)

102

144

89

 Carbohydrate transport and metabolism (G)

97

130

235

 Lipid transport and metabolism (I)

90

120

71

 Nucleotide transport and metabolism (F)

75

104

71

 Secondary metabolites biosynthesis, transport & catabolism (Q)

46

72

33

 Total

937 (28.9%)

1332 (33.2%)

1018 (33.6%)

Poorly Characterized

 Function unknown (S)

745

919

600

 Total

745 (22.9%)

919 (22.9%)

600 (19.8%)

Total no. of genes

2975

3695

2810