From: Genome analysis to decipher syntrophy in the bacterial consortium ‘SCP’ for azo dye degradation
Attribute | Stenotrophomonas acidaminiphila APG1 | Pseudomonas stutzeri APG2 | Cellulomonas sp. APG4 | |||
---|---|---|---|---|---|---|
Value | % of Total | Value | % of Total | Value | % of Total | |
Genome size | 4,102,834 bp | 100 | 4,699,510 bp | 100 | 3,743,932 bp | 100 |
G + C content | 2,830,955 bp | 69.0 | 2,974,790 bp | 63.30 | 2,751,790 bp | 73.5 |
No. of contigs | 96 | NA | 61 | NA | 48 | NA |
No. of subsystems | 301 | NA | 372 | NA | 270 | NA |
Largest contig | 222,264 bp | NA | 276,632 bp | NA | 452,363 bp | NA |
N50 | 91,288 bp | NA | 198,959 bp | NA | 136,916 bp | NA |
L50 | 15 | NA | 10 | NA | 9 | NA |
Secondary metabolites | 78,750 bp | 1.92 | 132,249 bp | 2.81 | 58,048 bp | 1.55 |
Genome islands | 553,777 bp | 13.50 | 616,150 bp | 13.11 | 412,247 bp | 11.01 |
Total genes | 4008 | 100.00 | 4682 | 100.00 | 3704 | 100.00 |
Protein-coding sequences | 3857 | 96.23 | 4537 | 96.90 | 3622 | 97.79 |
Number of GO annotations | 5930 | NA | 7069 | NA | 4496 | NA |
tRNAs | 57 | 1.42 | 54 | 1.15 | 48 | 1.30 |
rRNAs | 5 | 0.12 | 6 | 0.13 | 3 | 0.08 |
ncRNA | 4 | 0.10 | 4 | 0.09 | 3 | 0.08 |
Pseudogenes | 53 | 1.32 | 101 | 2.16 | 55 | 1.48 |
Tandem repeats | 314 | 7.83 | 102 | 2.18 | 540 | 14.58 |
CRISPR | 4 | 0.10 | 3 | 0.06 | 2 | 0.05 |
CAS | 0 | 0.00 | 0 | 0.00 | 0 | 0.00 |