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Table 2 Genome statistics and features of Stenotrophomonas acidaminiphila APG1, Pseudomonas stutzeri APG2 and Cellulomonas sp. APG4

From: Genome analysis to decipher syntrophy in the bacterial consortium ‘SCP’ for azo dye degradation

Attribute

Stenotrophomonas acidaminiphila APG1

Pseudomonas stutzeri APG2

Cellulomonas sp. APG4

Value

% of Total

Value

% of Total

Value

% of Total

Genome size

4,102,834 bp

100

4,699,510 bp

100

3,743,932 bp

100

G + C content

2,830,955 bp

69.0

2,974,790 bp

63.30

2,751,790 bp

73.5

No. of contigs

96

NA

61

NA

48

NA

No. of subsystems

301

NA

372

NA

270

NA

Largest contig

222,264 bp

NA

276,632 bp

NA

452,363 bp

NA

N50

91,288 bp

NA

198,959 bp

NA

136,916 bp

NA

L50

15

NA

10

NA

9

NA

Secondary metabolites

78,750 bp

1.92

132,249 bp

2.81

58,048 bp

1.55

Genome islands

553,777 bp

13.50

616,150 bp

13.11

412,247 bp

11.01

Total genes

4008

100.00

4682

100.00

3704

100.00

Protein-coding sequences

3857

96.23

4537

96.90

3622

97.79

Number of GO annotations

5930

NA

7069

NA

4496

NA

tRNAs

57

1.42

54

1.15

48

1.30

rRNAs

5

0.12

6

0.13

3

0.08

ncRNA

4

0.10

4

0.09

3

0.08

Pseudogenes

53

1.32

101

2.16

55

1.48

Tandem repeats

314

7.83

102

2.18

540

14.58

CRISPR

4

0.10

3

0.06

2

0.05

CAS

0

0.00

0

0.00

0

0.00