Skip to main content

Table 2 Genome statistics and features of Stenotrophomonas acidaminiphila APG1, Pseudomonas stutzeri APG2 and Cellulomonas sp. APG4

From: Genome analysis to decipher syntrophy in the bacterial consortium ‘SCP’ for azo dye degradation

Attribute Stenotrophomonas acidaminiphila APG1 Pseudomonas stutzeri APG2 Cellulomonas sp. APG4
Value % of Total Value % of Total Value % of Total
Genome size 4,102,834 bp 100 4,699,510 bp 100 3,743,932 bp 100
G + C content 2,830,955 bp 69.0 2,974,790 bp 63.30 2,751,790 bp 73.5
No. of contigs 96 NA 61 NA 48 NA
No. of subsystems 301 NA 372 NA 270 NA
Largest contig 222,264 bp NA 276,632 bp NA 452,363 bp NA
N50 91,288 bp NA 198,959 bp NA 136,916 bp NA
L50 15 NA 10 NA 9 NA
Secondary metabolites 78,750 bp 1.92 132,249 bp 2.81 58,048 bp 1.55
Genome islands 553,777 bp 13.50 616,150 bp 13.11 412,247 bp 11.01
Total genes 4008 100.00 4682 100.00 3704 100.00
Protein-coding sequences 3857 96.23 4537 96.90 3622 97.79
Number of GO annotations 5930 NA 7069 NA 4496 NA
tRNAs 57 1.42 54 1.15 48 1.30
rRNAs 5 0.12 6 0.13 3 0.08
ncRNA 4 0.10 4 0.09 3 0.08
Pseudogenes 53 1.32 101 2.16 55 1.48
Tandem repeats 314 7.83 102 2.18 540 14.58
CRISPR 4 0.10 3 0.06 2 0.05
CAS 0 0.00 0 0.00 0 0.00