Table 1 Spoligotyping families of RR-TB cases prevalent in the different provinces of South Africa (2014–2018)
From: Distribution and Clonality of drug-resistant tuberculosis in South Africa
Family | SIT Identified | Provinces (No) | Total No (%) cases | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
WC | EC | MP | NW | KZN | GP | NC | FS | Unknown province | |||
Beijing | 1 | 599 | 517 | 125 | 88 | 57 | 44 | 37 | 26 | 2 | 1495 (49.7) |
LAM | 4,20,33,42,59,60,95,111,130,211,452,811,815,1607,1624,1873, No ST | 53 | 55 | 47 | 54 | 42 | 29 | 31 | 17 | 1 | 329 (10.7) |
EAI | 6,48,236,702,806,947,1062,1251,1649 | 6 | 16 | 142 | 24 | 6 | 12 | 1 | 1 | Â | 208 (6.9) |
T | 37,39,50,51,52,53,73,131,136,144,149,154,156,167,196,205,254,281,291,334,358,273,628,713,719,732,784,926,966,1067,1107,1129,1166,1332,1767 | 61 | 43 | 30 | 60 | 29 | 18 | 16 | 12 | 2 | 271 (9.0) |
X | 18,70,91,92,119,137,200,336,347,449,No ST | 88 | 28 | 33 | 27 | 14 | 9 | 8 | 4 | 1 | 212 (7.1) |
S | 34,71,466,494,789,1211,1333, No ST | 23 | 17 | 16 | 37 | 49 | 9 | 16 | 5 | Â | 172 (5.7) |
H | 36,47,50,62,99,218,1822, No ST | 10 | 7 | 15 | 26 | 8 | 6 | 9 | 5 | 1 | 87 (2.9) |
MANU | 54,100,226,124,714,800, | 0 | 9 | 7 | 6 | 2 | 3 | 2 | 1 | Â | 30 (1.0) |
CAS | 21,26,428,1092 | 8 | 4 | 0 | 6 | 5 | 2 | 3 | 2 | Â | 30 (1.0) |
U | 2,384,584,231,907 | 7 | 0 | 2 | 1 | 1 | 0 | 0 | 1 | Â | 12 (0.4) |
Unknown/Orphan | Â | 42 | 27 | 18 | 29 | 17 | 10 | 12 | 5 | 1 | 161 (5.4) |
Total | Â | 897 | 723 | 435 | 358 | 230 | 142 | 135 | 79 | 8 | 3007 |