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Table 2 Anti-microbial resistance genes and incompatibility factors identified in the assembled plasmids. *, a plasmid that could only be assembled with the Flye assembler using the meta option; anti-microbial resistance genes and incompatibility factors indicated in bold were additionally identified by WeFaceNano

From: WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates

Sample

Plasmid

Anti-microbial resistance genes

Incompatibility factors

RB01

RB01-LZ135-CTX-128976

aac(6′)-Ib; aadA5; blaCTX-M-15; blaOXA-534; catB3; dfrA17; mph(A); sul1; tet(A)

IncFIA

RB01

RB01-LZ135-NDM-90845

aadA2; blaNDM-5; blaTEM-1B; dfrA12; rmtB; sul1

IncFII

RB02

RB02-JN105-IncN-CTX-139496-N

aadA1; aadA2; aph(3′)-Ia; blaCTX-M-55; blaTEM-1B; cmlA1; dfrA12; met(B); rmtB; sul3

IncFII; IncN

RB02

RB02-JN105-IncF-TET-116277-N

aac(3′)-IIa; aadA5; dfrA17; mph(A); sul1; tet(A)

IncFII; IncFIA

RB02

RB02-JN105-IncY-CTX-98443

IncY

RB02

RB02-JN105-IncN-NDM6–55342

blaNDM-1; dfrA14; qnrS1

IncN

RB02

RB02-JN105-IncX-NDM5–45823

blaNDM-5

IncX3

RB03

RB03-WH96T-IncF-OXA-153088

aac(6′)-Ib-cr; blaOXA-1; catB3; tet(B)

IncFIA; IncFIC

RB03

RB03-WH96T-IncN-NDM1–56215

blaNDM-1; dfrA14

IncN

RB04

RB04-SZ584-1 T-IncY-130,821

IncY

RB04

RB04-SZ584-1 T-IncF-TET-114056

aadA1; aadA2; cmlA1; dfrA12; floR; sul2; tet(A); tet(M)

IncFIB; IncFIC

RB04

RB04-SZ584-1 T-IncX3-NDM1-56 K-NC

blaNDM-1; floR

IncX3

RB04

RB04-234 K-Flye*

aph(3′)-la; aph(6)-ld; aac(6′)-lb-cr; blaNDM-1; blaCMY-2; blaOXA-1; blaDHA-1; mph(A); floR; catB3; qnrB4; ARR-3; sul1; sul2; tet(A)

IncA/C2; IncX3

RB05

RB05-C267-IncA/C-CTX-166467

aadA1; ant(2″)-Ia; ARR-2; blaCTX-M-55; blaOXA-10; catA2; cmlA1; floR; sul1; tet(A)

IncA/C2

RB06

RB06-C499-IncA/C-CTX-192739

aac(3)-Iid; aadA1; ant(2″)-Ia; blaCTX-M-55; blaOXA-10; cmlA1; floR; qnrA1; sul1; tet(A)

IncA/C2

RB07

RB07-vb0506-IncA/C-CTX-133742

aph(3″)-Ib; aph(6)-Id; blaCTX-M-182; dfrA23; tet(A)

IncA/C2

RB09

RB09-IncN-KPC-68571

aac(6′)-Ib-cr; ARR-3; blaCTX-M-3; blaKPC-2; blaTEM-1B; qnrS1

IncN

RB10

RB10-29KPC-IncF-TET-136532

aac(3)-IId; aadA5; aph(3″)-Ib; aph(6)-Id; blaTEM-1B; dfrA17; mph(A); qepA1; rmtB; sul1; sul2; tet(A)

Inc FIA; IncFIB; IncFII

RB10

RB10-29KPC-IncY-KPC-98 K-N

blaKPC-2

IncY

RB11

RB11-IncF-IncHI-KPC-238153

blaKPC-2; dfrA14

IncFIB

RB12

RB12-74 T-KPC-IncF-115 K-N

Col156; IncFIA; IncFIB; IncFII

RB12

RB12-74 T-KPC-IncN-IncX1-KPC-108 K-N

aph(3′)-IIa; blaKPC-2; rmtB

IncFII; IncN; IncX1