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Fig. 2 | BMC Microbiology

Fig. 2

From: WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates

Fig. 2

Outline of the WeFaceNano workflow, including the output and used software for each step. The steps of WeFaceNano include: (1) easy data upload, (2) a report with raw read statistics including histogram plots, (3) fast assembly and assembly visualizations, (4) BLAST identification of known plasmids summarized in a BLAST table, (5) detection of anti-microbial resistance genes and plasmid incompatibility factors summarized in an anti-microbial resistance gene table and an incompatibility factors Table. (6) web reporting, including ring image(s) of the results

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