Isolation and genomic characterization of five novel strains of Erysipelotrichaceae from commercial pigs

BMC Microbiology

Table 1 The metabolic pathways and corresponding carbohydrate substrates according to the shared protein sequences of five isolates

Carbohydrate metabolism	Metabolic substrate	4–8-110	4–15-1	4–2-123	4–6-57	5–26-39
Galactose metabolism	N-acetyl-D-galactosamine	√	√	√	√	√
Galactose metabolism	Lactose			√
Fructose and mannose metabolism	D-Mannose			√	√	√
Fructose and mannose metabolism	D-Fructose	√	√	√
Amino sugar and nucleotide sugar metabolism	Glc	√	√	√	√	√
Amino sugar and nucleotide sugar metabolism	MurNAc	√	√
Starch and sucrose metabolism	Trehalose/Maltose	√	√
Starch and sucrose metabolism	Glycogen	√	√	√	√	√
Glycolysis / Gluconeogenesis	D-Glucose	√	√	√	√	√
Glycolysis / Gluconeogenesis	Arbutin/Salicin	√	√	√	√	√
Pentose and glucuronate interconversions	D-Glucuronate	√	√
Pentose phosphate pathway	β-D-Glucose-6P	√	√	√	√	√
Pentose phosphate pathway	2-Deoxy-D-ribose-1P	√	√	√	√	√

Note: “√” means that the genome of the strains contains the carbohydrate metabolism pathway. 4–8-110 and 4–15-1: Erysipelotrichaceae bacterium OH741_COT-311 strains; 4–2-123: Eubacterium sp. AM28–29 strain, and 4–6-57 and 5–26-39: Faecalitalea cylindroides strains; Glc glucose, MurNAc N-acetylmuramate

ISSN: 1471-2180