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Table 1 Genomic features of the M. intracellulare and related strains enrolled in this study

From: Comparative genomic analysis of Mycobacterium intracellulare: implications for clinical taxonomic classification in pulmonary Mycobacterium avium-intracellulare complex disease

 

Strain name (GenBank Accession number)

Best match strain on NCBI references for clinical strains, or category in NCBI database for NCBI-registered strains

Best match, % mapped

Clinical strains

M.i.198

M. intracellulare MOTT-02

98

M.i.27

M. intracellulare ATCC 13950

87

M001

M. paraintracellulare

90

M002

M. intracellulare ATCC 13950

95

M003

M. indicus pranii

95

M004

M. intracellulare MOTT-02

98

M005

M. intracellulare ATCC 13950

94

M006

M. intracellulare ATCC 13950

92

M007

M. intracellulare ATCC 13950

94

M008

M. intracellulare ATCC 13950

89

M009

M. intracellulare ATCC 13950

90

M010

M. intracellulare ATCC 13950

96

M011

M. indicus pranii

97

M012

M. indicus pranii

93

M013

M. intracellulare ATCC 13950

98

M014

M. intracellulare ATCC 13950

100

M015

M. indicus pranii

95

M016

M. intracellulare ATCC 13950

95

M017

M. paraintracellulare

92

M018

M. intracellulare ATCC 13950

85

M019

M. paraintracellulare

92

M020

M. paraintracellulare

92

M021

M. paraintracellulare

92

M022

M. intracellulare MOTT-02

100

M023

M. intracellulare ATCC 13950

90

M024

M. intracellulare ATCC 13950

94

M025

M. intracellulare ATCC 13950

92

M026

M. intracellulare ATCC 13950

88

M027

M. indicus pranii

95

M028

M. intracellulare ATCC 13950

90

M029

M. indicus pranii

93

NCBI-registered strains

ATCC13950(NC_016946.1)

M. intracellulare

 

1956(JAOG01.1)

M. intracellulare

 

CSURP8077(CAAHFM01.1)

M. intracellulare

 

FLAC0133(NZ_CP023146.1)

M. intracellulare

 

FLAC0181(NZ_CP023149)

M. intracellulare

 

2285(JAOD01.1)

M. intracellulare

 

MIN_061107_1834(JAOM01.1)

M. intracellulare

 

MIN052511_1280(JAON01.1)

M. intracellulare

 

852002-53206_SCH5915646(LZIO01.1)

M. intracellulare

 

E3191(LZJO01.1)

M. intracellulare

 

E2190(LZJT01.1)

M. intracellulare

 

MOTT-02(NC_016947.1)

M. intracellulare

 

FLAC0204(NSFC01.1)

M. intracellulare

 

FLAC0162(NSFE01.1)

M. intracellulare

 

MTCC9506(NC_018612)

M. indicus pranii

 

JCM30622(NZ_AP022597)

M. paraintracellulare

 

MOTT64(NC_016948)

M. paraintracellulare

 

KCTC29084(NCXN01.1)

M. paraintracellulare

 

05–1390(NC_021715)

M. yongonense

 

Asan36527(NZ_CP015965)

M. yongonense

 

Asan36912(CP015964)

M. yongonense

 

1099801.4(MBDX01.1)

M. yongonense

 

E3170(MBDZ01.1)

M. yongonense

 

RT955(PSQD01.1)

M. yongonense

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