Skip to main content

Table 3 Comparison analysis of type III effector proteins genes (Coverage%/Identity%) in Rs-P.362200 and other strains

From: Complete genome sequence analysis of the peanut pathogen Ralstonia solanacearum strain Rs-P.362200

Effector name Rs-P.362200 gene ID GMI1000 YC45 CMR15 PSI07 Po82 HA4–1
RipA1 1_3262 95/99 100/98 absent absent absent 100/100
RipA2 2_1476 100/100 100/100 100/93 100/79 97/78 100/100
RipA3 2_596 96/98 90/54 100/90 96/82 100/69 96/99
RipA4 2_597 100/99 96/99 100/89 100/80 90/53 100/100
RipA5 2_793 99/97 99/97 absent 100/79 97/55 99/99
RipAB 2_627 100/99 100/99 99/93 100/77 100/70 100/100
RipAC 2_625 97/100 absent 97/46 99/69 93/52 absent
2_626 99/99 absent 99/52 99/80 99/66 absent
RipAD 2_1349 100/98 100/99 100/80 100/74 98/69 100/100
RipAE 2_617 100/99 100/100 100/97 100/96 100/97 100/100
RipAF1 2_571 100/98 absent 100/87 absent 100/58 100/100
RipAH 1_1184 absent absent absent absent absent absent
RipAJ 1_3299 100/99 100/100 100/73 100/69 100/71 100/100
RipAK 1_3050 100/100 100/99 absent absent absent 100/100
RipAL 2_480 absent absent 99/83 100/99 96/81 100/100
RipAM 1_2241 100/100 100/100 100/94 100/83 89/74 100/100
RipAN 2_595 97/99 100/99 97/85 92/74 97/70 96/99
RipAO 2_630 100/97 100/98 100/83 100/54 absent 100/100
RipAP 2_982 absent 100/99 100/84 absent 100/79 100/100
RipAQ 2_621 100/99 100/100 100/98 100/93 100/92 100/100
RipAR 2_1003 100/98 100/99 100/83 95/72 99/65 95/57
RipAS 2_1121 89/99 100/99 100/89 absent 97/52 100/100
RipAT 2_1125 74/98 100/99 99/64 74/71 99/63 74/99
RipAU 2_1202 100/97 100/98 100/82 99/70 99/70 100/100
RipAV 2_488 100/98 100/98 100/88 absent 100/87 100/100
RipAW 2_1218 82/97 82/98 82/85 100/66 100/63 82/99
RipAX2 2_329 89/100 absent absent absent absent 88/100
RipAY 2_791 83/95 100/99 100/83 95/67 100/60 82/99
RipB 1_1817 100/100 100/99 98/80 100/79 100/72 100/100
RipBC 1_2236 100/100 100/100 100/99 100/98 100/93 100/100
RipBF 2_1512 100/99 absent 100/96 absent 100/96 100/100
RipBM 2_1577 absent absent 100/90 100/94 absent 100/100
RipC1 2_1006 100/98 100/98 absent 95/96 96/70 100/100
RipC2 2_94 84/91 100/98 100/67 100/83 100/63 100/100
RipE1 1_2140 100/99 absent 100/87 100/79 100/85 100/100
RipE2 1_1224 absent absent absent 78/97 100/89 100/100
3_27 absent absent absent absent absent absent
RipF1 2_640 85/96 86/95 85/94 86/85 85/87 85/94
RipG1 2_649 100/99 100/99 absent 92/53 absent 100/100
RipG2 2_430 100/98 100/96 100/81 100/64 100/73 94/99
RipG3 2_1452 100/98 100/98 100/86 100/71 100/59 100/100
RipG4 1_418 87/99 100/99 100/78 100/51 100/58 86/99
RipG5 1–419 81/99 81/99 80/89 81/74 81/65 100/100
RipG7 1_645 98/69 98/69 98/68 99/73 99/65 100/100
RipH1 1_571 100/97 100/97 100/82 98/65 98/39 100/99
RipH2 2_1579 92/97 100/97 100/82 98/55 98/49 100/100
RipH3 2_1525 100/99 100/99 100/86 98/71 99/79 100/100
RipI 1_2027 100/100 100/100 100/87 100/93 100/82 100/100
RipJ 2_653 98/71 absent 94/26 absent 100/72 100/100
2_679 97/67 absent absent absent 97/72 97/71
RipL 2_1560 100/99 100/97 99/81 absent 100/61 100/100
RipM 1_483 100/99 100/98 100/89 99/80 absent 100/100
RipN 2_905 100/98 100/99 100/89 98/73 100/73 100/100
RipO1 2_116 100/99 absent 100/91 absent 96/86 100/100
RipP1 1_1183 100/95 absent absent absent 100/95 100/100
2_657 absent absent absent absent absent 100/100
3_83 absent absent absent absent absent 100/100
RipP2 1_3098 100/100 100/100 100/96 absent 100/84 100/100
RipQ 2_1046 70/99 70/99 70/76 absent 100/71 69/99
RipR 2_1050 100/100 100/100 100/91 100/82 100/80 100/100
RipS1 1_2108 100/99 100/99 100/91 100/75 100/89 99/70
RipS2 2_1105 98/99 91/50 98/91 99/78 98/75 100/99
RipS3 2_699 100/98 100/98 100/92 100/77 100/76 100/100
RipS4 1_454 98/98 99/99 99/83 91/62 97/72 92/63
RipS5 2_90 100/99 100/99 100/85 100/76 100/70 100/100
RipS6 1_3270 89/99 89/99 94/49 93/48 91/49 89/99
RipS7 1_3142 100/99 100/100 100/97 100/92 100/92 100/100
RipS8 1_457 79/63 100/98 78/61 100/90 78/63 100/100
RipT 1_1155 71/100 absent absent 99/89 absent 100/100
1_1221 71/87 absent absent 100/94 absent 99/90
RipTAL 1_432 100/99 100/99 absent 64/75 absent 100/100
RipTPS 2_487 100/99 100/99 100/96 94/76 80/44 100/100
RipU 2_979 absent 100/99 absent 100/77 100/78 100/100
RipV1 1_653 61/97 61/97 58/85 54/71 53/63 100/100
RipW 1_2687 100/99 100/99 100/90 100/84 100/78 100/100
RipX 2_628 100/95 100/95 100/77 100/74 99/63 100/100
RipY 1_1806 99/62 99/62 99/61 99/61 99/60 100/100
RipZ 2_612 100/99 100/99 100/96 100/88 100/86 100/100
RS-T3E-Hyp12 2_1563 100/99 100/100 100/94 100/90 100/81 100/100
RS-T3E-Hyp6 1_1198 absent absent 71/90 absent absent 72/99
RS-T3E-Hyp8 2_216 100/100 100/99 100/99 100/97 100/94 100/100
Total 75 71 61 65 61 66 77
Back to article page

BMC Microbiology

ISSN: 1471-2180

Contact us

\