Table 3 Comparison analysis of type III effector proteins genes (Coverage%/Identity%) in Rs-P.362200 and other strains
From: Complete genome sequence analysis of the peanut pathogen Ralstonia solanacearum strain Rs-P.362200
Effector name | Rs-P.362200 gene ID | GMI1000 | YC45 | CMR15 | PSI07 | Po82 | HA4–1 |
|---|---|---|---|---|---|---|---|
RipA1 | 1_3262 | 95/99 | 100/98 | absent | absent | absent | 100/100 |
RipA2 | 2_1476 | 100/100 | 100/100 | 100/93 | 100/79 | 97/78 | 100/100 |
RipA3 | 2_596 | 96/98 | 90/54 | 100/90 | 96/82 | 100/69 | 96/99 |
RipA4 | 2_597 | 100/99 | 96/99 | 100/89 | 100/80 | 90/53 | 100/100 |
RipA5 | 2_793 | 99/97 | 99/97 | absent | 100/79 | 97/55 | 99/99 |
RipAB | 2_627 | 100/99 | 100/99 | 99/93 | 100/77 | 100/70 | 100/100 |
RipAC | 2_625 | 97/100 | absent | 97/46 | 99/69 | 93/52 | absent |
2_626 | 99/99 | absent | 99/52 | 99/80 | 99/66 | absent | |
RipAD | 2_1349 | 100/98 | 100/99 | 100/80 | 100/74 | 98/69 | 100/100 |
RipAE | 2_617 | 100/99 | 100/100 | 100/97 | 100/96 | 100/97 | 100/100 |
RipAF1 | 2_571 | 100/98 | absent | 100/87 | absent | 100/58 | 100/100 |
RipAH | 1_1184 | absent | absent | absent | absent | absent | absent |
RipAJ | 1_3299 | 100/99 | 100/100 | 100/73 | 100/69 | 100/71 | 100/100 |
RipAK | 1_3050 | 100/100 | 100/99 | absent | absent | absent | 100/100 |
RipAL | 2_480 | absent | absent | 99/83 | 100/99 | 96/81 | 100/100 |
RipAM | 1_2241 | 100/100 | 100/100 | 100/94 | 100/83 | 89/74 | 100/100 |
RipAN | 2_595 | 97/99 | 100/99 | 97/85 | 92/74 | 97/70 | 96/99 |
RipAO | 2_630 | 100/97 | 100/98 | 100/83 | 100/54 | absent | 100/100 |
RipAP | 2_982 | absent | 100/99 | 100/84 | absent | 100/79 | 100/100 |
RipAQ | 2_621 | 100/99 | 100/100 | 100/98 | 100/93 | 100/92 | 100/100 |
RipAR | 2_1003 | 100/98 | 100/99 | 100/83 | 95/72 | 99/65 | 95/57 |
RipAS | 2_1121 | 89/99 | 100/99 | 100/89 | absent | 97/52 | 100/100 |
RipAT | 2_1125 | 74/98 | 100/99 | 99/64 | 74/71 | 99/63 | 74/99 |
RipAU | 2_1202 | 100/97 | 100/98 | 100/82 | 99/70 | 99/70 | 100/100 |
RipAV | 2_488 | 100/98 | 100/98 | 100/88 | absent | 100/87 | 100/100 |
RipAW | 2_1218 | 82/97 | 82/98 | 82/85 | 100/66 | 100/63 | 82/99 |
RipAX2 | 2_329 | 89/100 | absent | absent | absent | absent | 88/100 |
RipAY | 2_791 | 83/95 | 100/99 | 100/83 | 95/67 | 100/60 | 82/99 |
RipB | 1_1817 | 100/100 | 100/99 | 98/80 | 100/79 | 100/72 | 100/100 |
RipBC | 1_2236 | 100/100 | 100/100 | 100/99 | 100/98 | 100/93 | 100/100 |
RipBF | 2_1512 | 100/99 | absent | 100/96 | absent | 100/96 | 100/100 |
RipBM | 2_1577 | absent | absent | 100/90 | 100/94 | absent | 100/100 |
RipC1 | 2_1006 | 100/98 | 100/98 | absent | 95/96 | 96/70 | 100/100 |
RipC2 | 2_94 | 84/91 | 100/98 | 100/67 | 100/83 | 100/63 | 100/100 |
RipE1 | 1_2140 | 100/99 | absent | 100/87 | 100/79 | 100/85 | 100/100 |
RipE2 | 1_1224 | absent | absent | absent | 78/97 | 100/89 | 100/100 |
3_27 | absent | absent | absent | absent | absent | absent | |
RipF1 | 2_640 | 85/96 | 86/95 | 85/94 | 86/85 | 85/87 | 85/94 |
RipG1 | 2_649 | 100/99 | 100/99 | absent | 92/53 | absent | 100/100 |
RipG2 | 2_430 | 100/98 | 100/96 | 100/81 | 100/64 | 100/73 | 94/99 |
RipG3 | 2_1452 | 100/98 | 100/98 | 100/86 | 100/71 | 100/59 | 100/100 |
RipG4 | 1_418 | 87/99 | 100/99 | 100/78 | 100/51 | 100/58 | 86/99 |
RipG5 | 1–419 | 81/99 | 81/99 | 80/89 | 81/74 | 81/65 | 100/100 |
RipG7 | 1_645 | 98/69 | 98/69 | 98/68 | 99/73 | 99/65 | 100/100 |
RipH1 | 1_571 | 100/97 | 100/97 | 100/82 | 98/65 | 98/39 | 100/99 |
RipH2 | 2_1579 | 92/97 | 100/97 | 100/82 | 98/55 | 98/49 | 100/100 |
RipH3 | 2_1525 | 100/99 | 100/99 | 100/86 | 98/71 | 99/79 | 100/100 |
RipI | 1_2027 | 100/100 | 100/100 | 100/87 | 100/93 | 100/82 | 100/100 |
RipJ | 2_653 | 98/71 | absent | 94/26 | absent | 100/72 | 100/100 |
2_679 | 97/67 | absent | absent | absent | 97/72 | 97/71 | |
RipL | 2_1560 | 100/99 | 100/97 | 99/81 | absent | 100/61 | 100/100 |
RipM | 1_483 | 100/99 | 100/98 | 100/89 | 99/80 | absent | 100/100 |
RipN | 2_905 | 100/98 | 100/99 | 100/89 | 98/73 | 100/73 | 100/100 |
RipO1 | 2_116 | 100/99 | absent | 100/91 | absent | 96/86 | 100/100 |
RipP1 | 1_1183 | 100/95 | absent | absent | absent | 100/95 | 100/100 |
2_657 | absent | absent | absent | absent | absent | 100/100 | |
3_83 | absent | absent | absent | absent | absent | 100/100 | |
RipP2 | 1_3098 | 100/100 | 100/100 | 100/96 | absent | 100/84 | 100/100 |
RipQ | 2_1046 | 70/99 | 70/99 | 70/76 | absent | 100/71 | 69/99 |
RipR | 2_1050 | 100/100 | 100/100 | 100/91 | 100/82 | 100/80 | 100/100 |
RipS1 | 1_2108 | 100/99 | 100/99 | 100/91 | 100/75 | 100/89 | 99/70 |
RipS2 | 2_1105 | 98/99 | 91/50 | 98/91 | 99/78 | 98/75 | 100/99 |
RipS3 | 2_699 | 100/98 | 100/98 | 100/92 | 100/77 | 100/76 | 100/100 |
RipS4 | 1_454 | 98/98 | 99/99 | 99/83 | 91/62 | 97/72 | 92/63 |
RipS5 | 2_90 | 100/99 | 100/99 | 100/85 | 100/76 | 100/70 | 100/100 |
RipS6 | 1_3270 | 89/99 | 89/99 | 94/49 | 93/48 | 91/49 | 89/99 |
RipS7 | 1_3142 | 100/99 | 100/100 | 100/97 | 100/92 | 100/92 | 100/100 |
RipS8 | 1_457 | 79/63 | 100/98 | 78/61 | 100/90 | 78/63 | 100/100 |
RipT | 1_1155 | 71/100 | absent | absent | 99/89 | absent | 100/100 |
1_1221 | 71/87 | absent | absent | 100/94 | absent | 99/90 | |
RipTAL | 1_432 | 100/99 | 100/99 | absent | 64/75 | absent | 100/100 |
RipTPS | 2_487 | 100/99 | 100/99 | 100/96 | 94/76 | 80/44 | 100/100 |
RipU | 2_979 | absent | 100/99 | absent | 100/77 | 100/78 | 100/100 |
RipV1 | 1_653 | 61/97 | 61/97 | 58/85 | 54/71 | 53/63 | 100/100 |
RipW | 1_2687 | 100/99 | 100/99 | 100/90 | 100/84 | 100/78 | 100/100 |
RipX | 2_628 | 100/95 | 100/95 | 100/77 | 100/74 | 99/63 | 100/100 |
RipY | 1_1806 | 99/62 | 99/62 | 99/61 | 99/61 | 99/60 | 100/100 |
RipZ | 2_612 | 100/99 | 100/99 | 100/96 | 100/88 | 100/86 | 100/100 |
RS-T3E-Hyp12 | 2_1563 | 100/99 | 100/100 | 100/94 | 100/90 | 100/81 | 100/100 |
RS-T3E-Hyp6 | 1_1198 | absent | absent | 71/90 | absent | absent | 72/99 |
RS-T3E-Hyp8 | 2_216 | 100/100 | 100/99 | 100/99 | 100/97 | 100/94 | 100/100 |
Total | 75 | 71 | 61 | 65 | 61 | 66 | 77 |