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Fig. 1 | BMC Microbiology

Fig. 1

From: Characterisation of IncI1 plasmids associated with change of phage type in isolates of Salmonella enterica serovar Typhimurium

Fig. 1

Maximum-likelihood phylogeny based on core chromosomal SNPs for 2015 outbreak isolates and for additional isolates of S. Typhimurium as listed in Table 3. The reference sequence is S. Typhimurium 01ST04081 (GenBank Acc. No. CP029840). The scale bar shows the proportion of total substitutions for the site. The legend shows the genotype, phage type, presence of antimicrobial resistance (AMR) genes and European MLVA for the isolates. The legend includes characteristics for the contained IncI1 plasmid when present in the isolate. RD1, RD2 and RD3 are regions of DNA sequence difference (see text) in the plasmids and the IncI1 type shows whether they are ‘Col’ or ‘Delta’ plasmids. No result for IncI1 type indicates absence of plasmid

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