TY - JOUR AU - Haworth, C. S. AU - Banks, J. AU - Capstick, T. AU - Fisher, A. J. AU - Gorsuch, T. AU - Laurenson, I. F. PY - 2017 DA - 2017// TI - British Thoracic Society guideline for the management of non-tuberculous mycobacterial pulmonary disease (NTM-PD) JO - BMJ Open Respir Res VL - 4 UR - https://doi.org/10.1136/bmjresp-2017-000242 DO - 10.1136/bmjresp-2017-000242 ID - Haworth2017 ER - TY - STD TI - Diel R, Jacob J, Lampenius N, Loebinger M, Nienhaus A, Rabe KF, et al. Burden of non-tuberculous mycobacterial pulmonary disease in Germany. Eur Respir J. 2017;49(4). https://doi.org/10.1183/13993003.02109-2016. ID - ref2 ER - TY - JOUR AU - Krieger, D. AU - Schonfeld, N. AU - Vesenbeckh, S. AU - Bettermann, G. AU - Bauer, T. T. AU - Russmann, H. PY - 2016 DA - 2016// TI - Is delamanid a potential agent in the treatment of diseases caused by Mycobacterium avium-intracellulare? JO - Eur Respir J VL - 48 UR - https://doi.org/10.1183/13993003.01420-2016 DO - 10.1183/13993003.01420-2016 ID - Krieger2016 ER - TY - JOUR AU - Chalmers, J. AU - Aksamit, T. AU - Carvalho, A. AU - Rendon, A. AU - Franco, I. PY - 2018 DA - 2018// TI - Non-tuberculous mycobacterial pulmonary infections JO - Pulmonol. VL - 24 UR - https://doi.org/10.1016/j.pulmoe.2017.12.005 DO - 10.1016/j.pulmoe.2017.12.005 ID - Chalmers2018 ER - TY - JOUR AU - Griffith, D. E. AU - Aksamit, T. AU - Brown-Elliott, B. A. AU - Catanzaro, A. AU - Daley, C. AU - Gordin, F. PY - 2007 DA - 2007// TI - An official ATS/IDSA statement: diagnosis, treatment, and prevention of nontuberculous mycobacterial diseases JO - Am J Respir Crit Care Med VL - 175 UR - https://doi.org/10.1164/rccm.200604-571ST DO - 10.1164/rccm.200604-571ST ID - Griffith2007 ER - TY - STD TI - Hwang JA, Kim S, Jo KW, Shim TS. Natural history of Mycobacterium avium complex lung disease in untreated patients with stable course. Eur Respir J. 2017;49(3). https://doi.org/10.1183/13993003.00537-2016. ID - ref6 ER - TY - STD TI - Koh WJ, Moon SM, Kim SY, Woo MA, Kim S, Jhun BW, et al. Outcomes of Mycobacterium avium complex lung disease based on clinical phenotype. Eur Respir J. 2017;50(3). https://doi.org/10.1183/13993003.02503-2016. ID - ref7 ER - TY - JOUR AU - Yoo, J. W. AU - Jo, K. W. AU - Kang, B. H. AU - Kim, M. Y. AU - Yoo, B. AU - Lee, C. K. PY - 2014 DA - 2014// TI - Mycobacterial diseases developed during anti-tumour necrosis factor-alpha therapy JO - Eur Respir J VL - 44 UR - https://doi.org/10.1183/09031936.00063514 DO - 10.1183/09031936.00063514 ID - Yoo2014 ER - TY - JOUR AU - Fletcher, L. A. AU - Chen, Y. AU - Whitaker, P. AU - Denton, M. AU - Peckham, D. G. AU - Clifton, I. J. PY - 2016 DA - 2016// TI - Survival of Mycobacterium abscessus isolated from people with cystic fibrosis in artificially generated aerosols JO - Eur Respir J VL - 48 UR - https://doi.org/10.1183/13993003.00849-2016 DO - 10.1183/13993003.00849-2016 ID - Fletcher2016 ER - TY - JOUR AU - Griffith, D. E. AU - Aksamit, T. R. PY - 2016 DA - 2016// TI - Understanding nontuberculous mycobacterial lung disease: it's been a long time coming JO - F1000Res VL - 5 UR - https://doi.org/10.12688/f1000research.9272.1 DO - 10.12688/f1000research.9272.1 ID - Griffith2016 ER - TY - JOUR AU - Kwon, Y. S. AU - Koh, W. J. PY - 2016 DA - 2016// TI - Diagnosis and treatment of Nontuberculous mycobacterial lung disease JO - J Korean Med Sci VL - 31 UR - https://doi.org/10.3346/jkms.2016.31.5.649 DO - 10.3346/jkms.2016.31.5.649 ID - Kwon2016 ER - TY - JOUR AU - Stout, J. E. AU - Koh, W. J. AU - Yew, W. W. PY - 2016 DA - 2016// TI - Update on pulmonary disease due to non-tuberculous mycobacteria JO - Int J Infect Dis VL - 45 UR - https://doi.org/10.1016/j.ijid.2016.03.006 DO - 10.1016/j.ijid.2016.03.006 ID - Stout2016 ER - TY - JOUR AU - Agusti, A. AU - Bel, E. AU - Thomas, M. AU - Vogelmeier, C. AU - Brusselle, G. AU - Holgate, S. PY - 2016 DA - 2016// TI - Treatable traits: toward precision medicine of chronic airway diseases JO - Eur Respir J VL - 47 UR - https://doi.org/10.1183/13993003.01359-2015 DO - 10.1183/13993003.01359-2015 ID - Agusti2016 ER - TY - JOUR AU - Chan, A. A. AU - Bashir, M. AU - Rivas, M. N. AU - Duvall, K. AU - Sieling, P. A. AU - Pieber, T. R. PY - 2016 DA - 2016// TI - Characterization of the microbiome of nipple aspirate fluid of breast cancer survivors JO - Sci Rep VL - 6 UR - https://doi.org/10.1038/srep28061 DO - 10.1038/srep28061 ID - Chan2016 ER - TY - JOUR AU - Philley, J. V. AU - Kannan, A. AU - Olusola, P. AU - McGaha, P. AU - Singh, K. P. AU - Samten, B. PY - 2019 DA - 2019// TI - Microbiome Diversity in Sputum of Nontuberculous Mycobacteria Infected Women with a History of Breast Cancer JO - Cell Physiol Biochem VL - 52 UR - https://doi.org/10.33594/000000020 DO - 10.33594/000000020 ID - Philley2019 ER - TY - JOUR AU - Hosgood, H. D. AU - Sapkota, A. R. AU - Rothman, N. AU - Rohan, T. AU - Hu, W. AU - Xu, J. PY - 2014 DA - 2014// TI - The potential role of lung microbiota in lung cancer attributed to household coal burning exposures JO - Environ Mol Mutagen VL - 55 UR - https://doi.org/10.1002/em.21878 DO - 10.1002/em.21878 ID - Hosgood2014 ER - TY - STD TI - Goedert JJ, Jones G, Hua X, Xu X, Yu G, Flores R, et al. Investigation of the association between the fecal microbiota and breast cancer in postmenopausal women: a population-based case-control pilot study. J Natl Cancer Inst. 2015;107(8). https://doi.org/10.1093/jnci/djv147. ID - ref17 ER - TY - JOUR AU - Coburn, B. AU - Wang, P. W. AU - Diaz Caballero, J. AU - Clark, S. T. AU - Brahma, V. AU - Donaldson, S. PY - 2015 DA - 2015// TI - Lung microbiota across age and disease stage in cystic fibrosis JO - Sci Rep VL - 5 UR - https://doi.org/10.1038/srep10241 DO - 10.1038/srep10241 ID - Coburn2015 ER - TY - JOUR AU - Hieken, T. J. AU - Chen, J. AU - Hoskin, T. L. AU - Walther-Antonio, M. AU - Johnson, S. AU - Ramaker, S. PY - 2016 DA - 2016// TI - The microbiome of aseptically collected human breast tissue in benign and malignant disease JO - Sci Rep VL - 6 UR - https://doi.org/10.1038/srep30751 DO - 10.1038/srep30751 ID - Hieken2016 ER - TY - JOUR AU - Wu, J. AU - Liu, W. AU - He, L. AU - Huang, F. AU - Chen, J. AU - Cui, P. PY - 2013 DA - 2013// TI - Sputum microbiota associated with new, recurrent and treatment failure tuberculosis JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0083445 DO - 10.1371/journal.pone.0083445 ID - Wu2013 ER - TY - STD TI - Sulaiman I, Wu BG, Li Y, Scott AS, Malecha P, Scaglione B, et al. Evaluation of the airway microbiome in nontuberculous mycobacteria disease. Eur Respir J. 2018;52(4). https://doi.org/10.1183/13993003.00810-2018. ID - ref21 ER - TY - JOUR AU - Chan, E. D. AU - Iseman, M. D. PY - 2010 DA - 2010// TI - Slender, older women appear to be more susceptible to nontuberculous mycobacterial lung disease JO - Gend Med VL - 7 UR - https://doi.org/10.1016/j.genm.2010.01.005 DO - 10.1016/j.genm.2010.01.005 ID - Chan2010 ER - TY - JOUR AU - Uwamino, Y. AU - Nishimura, T. AU - Sato, Y. AU - Tamizu, E. AU - Asakura, T. AU - Uno, S. PY - 2019 DA - 2019// TI - Low serum estradiol levels are related to Mycobacterium avium complex lung disease: a cross-sectional study JO - BMC Infect Dis VL - 19 UR - https://doi.org/10.1186/s12879-019-4668-x DO - 10.1186/s12879-019-4668-x ID - Uwamino2019 ER - TY - JOUR AU - Tsuyuguchi, K. AU - Suzuki, K. AU - Matsumoto, H. AU - Tanaka, E. AU - Amitani, R. AU - Kuze, F. PY - 2001 DA - 2001// TI - Effect of oestrogen on Mycobacterium avium complex pulmonary infection in mice JO - Clin Exp Immunol VL - 123 UR - https://doi.org/10.1046/j.1365-2249.2001.01474.x DO - 10.1046/j.1365-2249.2001.01474.x ID - Tsuyuguchi2001 ER - TY - JOUR AU - Calippe, B. AU - Douin-Echinard, V. AU - Laffargue, M. AU - Laurell, H. AU - Rana-Poussine, V. AU - Pipy, B. PY - 2008 DA - 2008// TI - Chronic estradiol administration in vivo promotes the proinflammatory response of macrophages to TLR4 activation: involvement of the phosphatidylinositol 3-kinase pathway JO - J Immunol VL - 180 UR - https://doi.org/10.4049/jimmunol.180.12.7980 DO - 10.4049/jimmunol.180.12.7980 ID - Calippe2008 ER - TY - JOUR AU - Kartalija, M. AU - Ovrutsky, A. R. AU - Bryan, C. L. AU - Pott, G. B. AU - Fantuzzi, G. AU - Thomas, J. PY - 2013 DA - 2013// TI - Patients with nontuberculous mycobacterial lung disease exhibit unique body and immune phenotypes JO - Am J Respir Crit Care Med VL - 187 UR - https://doi.org/10.1164/rccm.201206-1035OC DO - 10.1164/rccm.201206-1035OC ID - Kartalija2013 ER - TY - JOUR AU - Nam, H. AU - Ferguson, B. S. AU - Stephens, J. M. AU - Morrison, R. F. PY - 2013 DA - 2013// TI - Impact of obesity on IL-12 family gene expression in insulin responsive tissues JO - Biochim Biophys Acta VL - 1832 UR - https://doi.org/10.1016/j.bbadis.2012.08.011 DO - 10.1016/j.bbadis.2012.08.011 ID - Nam2013 ER - TY - JOUR AU - Naidoo, C. C. AU - Nyawo, G. R. AU - Wu, B. G. AU - Walzl, G. AU - Warren, R. M. AU - Segal, L. N. PY - 2019 DA - 2019// TI - The microbiome and tuberculosis: state of the art, potential applications, and defining the clinical research agenda JO - Lancet Respir Med VL - 7 UR - https://doi.org/10.1016/S2213-2600(18)30501-0 DO - 10.1016/S2213-2600(18)30501-0 ID - Naidoo2019 ER - TY - JOUR AU - Pavlik, I. AU - Gersl, M. AU - Bartos, M. AU - Ulmann, V. AU - Kaucka, P. AU - Caha, J. PY - 2018 DA - 2018// TI - Nontuberculous mycobacteria in the environment of Hranice abyss, the world's deepest flooded cave (Hranice karst, Czech Republic) JO - Environ Sci Pollut Res Int VL - 25 UR - https://doi.org/10.1007/s11356-018-2450-z DO - 10.1007/s11356-018-2450-z ID - Pavlik2018 ER - TY - JOUR AU - Kaestli, M. AU - O'Donnell, M. AU - Rose, A. AU - Webb, J. R. AU - Mayo, M. AU - Currie, B. J. PY - 2019 DA - 2019// TI - Opportunistic pathogens and large microbial diversity detected in source-to-distribution drinking water of three remote communities in northern Australia JO - PLoS Negl Trop Dis VL - 13 UR - https://doi.org/10.1371/journal.pntd.0007672 DO - 10.1371/journal.pntd.0007672 ID - Kaestli2019 ER - TY - JOUR AU - Mannisto, M. K. AU - Salkinoja-Salonen, M. S. AU - Puhakka, J. A. PY - 2001 DA - 2001// TI - In situ polychlorophenol bioremediation potential of the indigenous bacterial community of boreal groundwater JO - Water Res VL - 35 UR - https://doi.org/10.1016/s0043-1354(00)00527-3 DO - 10.1016/s0043-1354(00)00527-3 ID - Mannisto2001 ER - TY - STD TI - Abidin NZ, Gardner AI, Robinson HL, Haq IJ, Thomas MF, Brodlie M. Trends in nontuberculous mycobacteria infection in children and young people with cystic fibrosis. J Cyst Fibros. 2020. https://doi.org/10.1016/j.jcf.2020.09.007. ID - ref32 ER - TY - JOUR AU - Patel, S. AU - Wolf, T. PY - 2002 DA - 2002// TI - Cavitary lung lesions due to coinfection of Rhodococcus equi and Mycobacterium kansasii in a patient with acquired immunodeficiency syndrome JO - Am J Med VL - 112 UR - https://doi.org/10.1016/s0002-9343(02)01089-6 DO - 10.1016/s0002-9343(02)01089-6 ID - Patel2002 ER - TY - STD TI - Kanzara T, Hall A, Namnyak S, Owa T. Misidentification of Mycobacterium fortuitum in an immunocompetent patient presenting with a unilateral neck mass. BMJ Case Rep. 2014;2014. https://doi.org/10.1136/bcr-2014-203857. ID - ref34 ER - TY - JOUR AU - Wang, H. Y. AU - Kim, H. AU - Kim, S. AU - Bang, H. AU - Kim, D. K. AU - Lee, H. PY - 2015 DA - 2015// TI - Evaluation of PCR-reverse blot hybridization assay for the differentiation and identification of Mycobacterium species in liquid cultures JO - J Appl Microbiol VL - 118 UR - https://doi.org/10.1111/jam.12670 DO - 10.1111/jam.12670 ID - Wang2015 ER - TY - JOUR AU - Keerthirathne, T. P. AU - Magana-Arachchi, D. N. AU - Madegedara, D. AU - Sooriyapathirana, S. S. PY - 2016 DA - 2016// TI - Real time PCR for the rapid identification and drug susceptibility of mycobacteria present in bronchial washings JO - BMC Infect Dis VL - 16 UR - https://doi.org/10.1186/s12879-016-1943-y DO - 10.1186/s12879-016-1943-y ID - Keerthirathne2016 ER - TY - JOUR AU - Sahraoui, N. AU - Muller, B. AU - Guetarni, D. AU - Boulahbal, F. AU - Yala, D. AU - Ouzrout, R. PY - 2009 DA - 2009// TI - Molecular characterization of Mycobacterium bovis strains isolated from cattle slaughtered at two abattoirs in Algeria JO - BMC Vet Res VL - 5 UR - https://doi.org/10.1186/1746-6148-5-4 DO - 10.1186/1746-6148-5-4 ID - Sahraoui2009 ER - TY - JOUR AU - Mohamed, A. M. AU - Abou El-Ella, G. A. AU - Nasr, E. A. PY - 2009 DA - 2009// TI - Phenotypic and molecular typing of tuberculous and nontuberculous Mycobacterium species from slaughtered pigs in Egypt JO - J Vet Diagn Investig VL - 21 UR - https://doi.org/10.1177/104063870902100107 DO - 10.1177/104063870902100107 ID - Mohamed2009 ER - TY - JOUR AU - Macovei, L. AU - McCafferty, J. AU - Chen, T. AU - Teles, F. AU - Hasturk, H. AU - Paster, B. J. PY - 2015 DA - 2015// TI - The hidden 'mycobacteriome' of the human healthy oral cavity and upper respiratory tract JO - J Oral Microbiol VL - 7 UR - https://doi.org/10.3402/jom.v7.26094 DO - 10.3402/jom.v7.26094 ID - Macovei2015 ER - TY - STD TI - Tveiten H, Brantsaeter AB, Mengshoel AT. Non-tuberculous mycobacterial pulmonary infections. Tidsskr Nor Laegeforen. 2018;138(19). https://doi.org/10.4045/tidsskr.18.0077. ID - ref40 ER - TY - JOUR AU - Jeong, Y. J. AU - Lee, K. S. AU - Koh, W. J. AU - Han, J. AU - Kim, T. S. AU - Kwon, O. J. PY - 2004 DA - 2004// TI - Nontuberculous mycobacterial pulmonary infection in immunocompetent patients: comparison of thin-section CT and histopathologic findings JO - Radiology. VL - 231 UR - https://doi.org/10.1148/radiol.2313030833 DO - 10.1148/radiol.2313030833 ID - Jeong2004 ER - TY - JOUR AU - Chung, M. J. AU - Lee, K. S. AU - Koh, W. J. AU - Lee, J. H. AU - Kim, T. S. AU - Kwon, O. J. PY - 2005 DA - 2005// TI - Thin-section CT findings of nontuberculous mycobacterial pulmonary diseases: comparison between Mycobacterium avium-intracellulare complex and Mycobacterium abscessus infection JO - J Korean Med Sci VL - 20 UR - https://doi.org/10.3346/jkms.2005.20.5.777 DO - 10.3346/jkms.2005.20.5.777 ID - Chung2005 ER - TY - JOUR AU - Caporaso, J. G. AU - Kuczynski, J. AU - Stombaugh, J. AU - Bittinger, K. AU - Bushman, F. D. AU - Costello, E. K. PY - 2010 DA - 2010// TI - QIIME allows analysis of high-throughput community sequencing data JO - Nat Methods VL - 7 UR - https://doi.org/10.1038/nmeth.f.303 DO - 10.1038/nmeth.f.303 ID - Caporaso2010 ER - TY - JOUR AU - Magoc, T. AU - Salzberg, S. L. PY - 2011 DA - 2011// TI - FLASH: fast length adjustment of short reads to improve genome assemblies JO - Bioinformatics. VL - 27 UR - https://doi.org/10.1093/bioinformatics/btr507 DO - 10.1093/bioinformatics/btr507 ID - Magoc2011 ER - TY - JOUR AU - Fu, L. AU - Niu, B. AU - Zhu, Z. AU - Wu, S. AU - Li, W. PY - 2012 DA - 2012// TI - CD-HIT: accelerated for clustering the next-generation sequencing data JO - Bioinformatics. VL - 28 UR - https://doi.org/10.1093/bioinformatics/bts565 DO - 10.1093/bioinformatics/bts565 ID - Fu2012 ER - TY - JOUR AU - Edgar, R. C. PY - 2010 DA - 2010// TI - Search and clustering orders of magnitude faster than BLAST JO - Bioinformatics. VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq461 DO - 10.1093/bioinformatics/btq461 ID - Edgar2010 ER - TY - JOUR AU - Glockner, F. O. AU - Yilmaz, P. AU - Quast, C. AU - Gerken, J. AU - Beccati, A. AU - Ciuprina, A. PY - 2017 DA - 2017// TI - 25 years of serving the community with ribosomal RNA gene reference databases and tools JO - J Biotechnol VL - 261 UR - https://doi.org/10.1016/j.jbiotec.2017.06.1198 DO - 10.1016/j.jbiotec.2017.06.1198 ID - Glockner2017 ER -