Table 3 Genes related to metabolism in P. polymyxa SC2
Type | gene | product | log2FC(SH/S) |
|---|---|---|---|
Fructose and mannose metabolism | PPSC2_05870 | glycosyl hydrolase | 2.69 |
PPSC2_05910 | GDP-mannose 4,6-dehydratase | 7.84 | |
PPSC2_05865 | mannose-1-phosphate guanylyltransferase | 3.29 | |
PPSC2_02440 | PTS friuctose transporter subunit IIB | 3.46 | |
PPSC2_24735 | rhamnose isomerase | −2.09 | |
PPSC2_02450 | PTS mannose transporter subunit IID | 2.2 | |
PPSC2_05905 | GDP-L-fucose synthase | 6.89 | |
PPSC2_02445 | PTS mannose transporter subunit IIC | 2.51 | |
PPSC2_24740 | rhamnulose-1-phosphate aldolase | −2.43 | |
PPSC2_02435 | PTS mannose transporter subunit IID | 3.96 | |
Starch and sucrose metabolism | PPSC2_05860 | UDP-glucose 6-dehydrogenase | 4.22 |
PPSC2_05940 | UDP-glucose 6-dehydrogenase | 6.53 | |
PPSC2_16055 | pectin methylesterase | 3.4 | |
PPSC2_03770 | levansucrase | 3.25 | |
PPSC2_05805 | UTP-glucose-1-phosphate uridylyltransferase | 5.83 | |
PPSC2_03430 | PTS beta-glucoside transporter subunit IIABC | −4.99 | |
PPSC2_03425 | trehalose-6-phosphate hydrolase | −4.69 | |
PPSC2_13470 | glucose-1-phosphate adenylyltransferase | −3.71 | |
Glycerolipid metabolism | PPSC2_09660 | phosphate acyltransferase | 2.53 |
PPSC2_00395 | aldehyde dehydrogenase | 6.65 | |
PPSC2_15995 | glycerol dehydrogenase | −2.61 | |
Alanine, aspartate and glutamate metabolism | PPSC2_01185 | asparagine synthetase | 4.66 |
PPSC2_25355 | adenylosuccinate synthetase | −2.86 | |
PPSC2_14255 | aspartate ammonia-lyase | 3.69 | |
PPSC2_12155 | acetylornithine aminotransferase | 6.28 | |
PPSC2_06000 | asparagine synthase | 5.58 | |
PPSC2_22115 | glutamine--fructose-6-phosphate aminotransferase | −2.9 | |
PPSC2_16495 | aspartate carbamoyltransferase | −2.11 | |
Valine, leucine and isoleucine biosynthesis | PPSC2_09040 | transferase | 2.34 |
PPSC2_07085 | 2-isopropylmalate synthase | 2.76 | |
PPSC2_07090 | 3-isopropylmalate dehydrogenase | −2.59 | |
PPSC2_00400 | Â | 7.88 |