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Table 2 DEGs related to quorum sensing, chemotaxis, and biofilm formation in P. polymyxa SC2

From: Interactional mechanisms of Paenibacillus polymyxa SC2 and pepper (Capsicum annuum L.) suggested by transcriptomics

 

Gene

Product

name

log2FC(SH/S)

Quorum

sensing

PPSC2_02180

peptide ABC transporter substrate-binding protein

oppF1

2.61

PPSC2_02185

peptide ABC transporter permease

oppB1

4.2

PPSC2_02190

peptide ABC transporter permease

oppC1

3.94

PPSC2_02195

ABC transporter substrate-binding protein

oppA1

4.92

PPSC2_05715

peptide ABC transporter substrate-binding protein

 

2.65

PPSC2_05720

transports peptides consisting of two or three amino acids

dppB

2.71

PPSC2_05725

peptide ABC transporter permease

oppC3

2.31

PPSC2_10965

ABC transporter substrate-binding protein

oppA5

2.11

PPSC2_10970

diguanylate cyclase

oppB5

2.2

PPSC2_10975

peptide ABC transporter permease

oppC5

2.85

PPSC2_10980

peptide ABC transporter ATPase

oppD3

2.88

PPSC2_10985

peptide ABC transporter substrate-binding protein

oppF3

2.58

PPSC2_13025

nickel transporter permease NikC

dppC3

2.23

PPSC2_24700

ABC transporter ATPase

oppD7

2.07

PPSC2_25400

peptide ABC transporter substrate-binding protein

oppF9

2.94

PPSC2_25405

peptide ABC transporter ATPase

oppD9

3.6

PPSC2_25410

peptide ABC transporter permease

oppC9

3.35

PPSC2_25415

diguanylate cyclase

oppB9

3.26

PPSC2_25420

ABC transporter substrate-binding protein

dbp

2.91

Chemotaxis

PPSC2_08335

chemotaxis protein AER

aer

3.25

PPSC2_18805

chemotaxis protein

 

−4.65

PPSC2_09975

histidine kinase CheA

cheA

2.11

PPSC2_09985

cheC

cheC

1.71

PPSC2_09990

chemotaxis protein CheD

cheD

1.49

PPSC2_14595

chemotaxis protein CheR

cheR3

2.73

PPSC2_21235

chemotaxis protein CheR

cheR5

−2.53

PPSC2_09980

coupling protein CheW

cheW

2.04

PPSC2_09970

effector protein CheY

cheY

2.26

PPSC2_09915

flagellar motor switch protein FliM

fliM

2.16

PPSC2_09920

flagellar motor switch protein FliN

fliN

2.16

Biofilm formation

PPSC2_00125

AbrB family transcriptional regulator

abrB

−3.06

PPSC2_23095

Transcriptional regulatory protein DegU

degU

2.02

PPSC2_05800

tyrosine protein kinase

epsB

6.69

PPSC2_05810

multidrug MFS transporter

epsE

6.25

PPSC2_25275

transcriptional regulator

sinR

−1.2

PPSC2_03845

histidine kinase

kinA

2.34

PPSC2_03710

Regulator Abh

abh

2.74