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Table 2 The results of SARS-COV-2 N protein tertiary structure analysis

From: Identification and functional analysis of the SARS-COV-2 nucleocapsid protein

Project Name

Results

secondary structure

 Alpha helix

89/419 (21.24%)

 Extended strand

70/419 (16.71%)

 Beta turn

29/419 (6.92%)

 Random coil

231/419 (55.13%)

Tertiary structure

swiss-model

  Seq Identity

95.76%

  GMQE

0.17

  QMEAN

−2.02

SAVES v5.0

ERRAT

  Overall quality factor

93.5

Prove

  Z − score mean

0.833

  Z − score stddev

1.336

  Z − score RMS

1.572

  scored atoms

230

  outliers

16

  % outliers

7.000

Whatcheck

 RMS Z-scores

  Bond lengths

0.702

  Bond angles

1.057

  Omega angle restraints

0.899

  Side chain planarity

1.407

 Structure Z-scores

  1st generation packing quality

−4.798 (poor)

  Ramachandran plot appearance

−3.262 (poor)

  chi-1/chi-2 rotamer normality

−3.110 (poor)

  Backbone conformation

−28.233 (bad)

Verify 3D

59.32%

Procheck

87%