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Table 2 The results of SARS-COV-2 N protein tertiary structure analysis

From: Identification and functional analysis of the SARS-COV-2 nucleocapsid protein

Project Name Results
secondary structure
 Alpha helix 89/419 (21.24%)
 Extended strand 70/419 (16.71%)
 Beta turn 29/419 (6.92%)
 Random coil 231/419 (55.13%)
Tertiary structure
swiss-model
  Seq Identity 95.76%
  GMQE 0.17
  QMEAN −2.02
SAVES v5.0
ERRAT
  Overall quality factor 93.5
Prove
  Z − score mean 0.833
  Z − score stddev 1.336
  Z − score RMS 1.572
  scored atoms 230
  outliers 16
  % outliers 7.000
Whatcheck
 RMS Z-scores
  Bond lengths 0.702
  Bond angles 1.057
  Omega angle restraints 0.899
  Side chain planarity 1.407
 Structure Z-scores
  1st generation packing quality −4.798 (poor)
  Ramachandran plot appearance −3.262 (poor)
  chi-1/chi-2 rotamer normality −3.110 (poor)
  Backbone conformation −28.233 (bad)
Verify 3D 59.32%
Procheck 87%